myRT

myRT report for GCA_001930025.1_ASM193002v1

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Seq: LQDF01000082.1 Mannheimia haemolytica strain 2190MH isolate swab isolate 1 contig_82, whole genome shotgun sequence (37651 bp)
Overview 1 RT 1: 15533-27336 bp Neighborhood of RT #1 [15533, 27341] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15533-19558 bp Feature: domain Description: rpoB Location: 15557-19547 bp Feature: domain Description: rpoB Location: 1 5557-1 9547 bp Feature: gene Location: 19821-24104 bp Feature: domain Description: PRK00566 Location: 19857-23946 bp Feature: domain Description: PRK00566 Location: 1 9857-23946 bp Feature: gene Location: 24499-25809 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24694-25513 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24694-2551 3 bp Feature: gene Location: 25812-25994 bp Feature: gene Location: 26061-27341 bp Feature: domain Description: PRK00062 Location: 26067-27336 bp Feature: domain Description: PRK00062 Location: 26067-27336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQDF01000096.1 Mannheimia haemolytica strain 2190MH isolate swab isolate 1 contig_96, whole genome shotgun sequence (85394 bp)
Overview 1 RT 1: 79764-84160 bp Neighborhood of RT #1 [79764, 84162] GIIM HNHc RVT-GII RVT_N RVT-GII rpsI rplM Feature: gene Location: 79764-79898 bp Feature: gene Location: 79920-80534 bp Feature: domain Description: GIIM Note: maturase Location: 79932-80115 bp Feature: domain Description: GIIM Note: maturase Location: 79932 -80115 bp Feature: domain Description: HNHc Note: nucleases Location: 80343-80499 bp Feature: domain Description: HNHc Note: nucleases Location: 80343-80499 bp Feature: gene Location: 80531-80995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80537-80903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80537-80903 bp Feature: gene Location: 81110-81640 bp Feature: domain Description: RVT_N Location: 81179-81422 bp Feature: domain Description: RVT_N Location: 81179-8142 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81467-81635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81467-81635 bp Feature: gene Location: 83322-83717 bp Feature: domain Description: rpsI Location: 83334-83715 bp Feature: domain Description: rpsI Location: 83334-83715 bp Feature: gene Location: 83734-84162 bp Feature: domain Description: rplM Location: 83737-84160 bp Feature: domain Description: rplM Location: 83737-84160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655), rpsI (PRK00132), rplM (PRK09216)