myRT

myRT report for GCA_001930105.1_ASM193010v1

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Seq: LQDO01000080.1 Mannheimia haemolytica strain 232020MH isolate swab isolate 1 contig_80, whole genome shotgun sequence (37680 bp)
Overview 1 RT 1: 15562-27365 bp Neighborhood of RT #1 [15562, 27370] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15562-19587 bp Feature: domain Description: rpoB Location: 15586-19576 bp Feature: domain Description: rpoB Location: 1 5586-1 9576 bp Feature: gene Location: 19850-24133 bp Feature: domain Description: PRK00566 Location: 19886-23975 bp Feature: domain Description: PRK00566 Location: 1 9886-23975 bp Feature: gene Location: 24528-25838 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24723-25542 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24723-25542 bp Feature: gene Location: 25841-26023 bp Feature: gene Location: 26090-27370 bp Feature: domain Description: PRK00062 Location: 26096-27365 bp Feature: domain Description: PRK00062 Location: 26096-27365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQDO01000098.1 Mannheimia haemolytica strain 232020MH isolate swab isolate 1 contig_98, whole genome shotgun sequence (85008 bp)
Overview 1 RT 1: 79383-83779 bp Neighborhood of RT #1 [79383, 83781] GIIM HNHc RVT-GII RVT_N RVT-GII rpsI rplM Feature: gene Location: 79383-79517 bp Feature: gene Location: 79539-80153 bp Feature: domain Description: GIIM Note: maturase Location: 79551-79734 bp Feature: domain Description: GIIM Note: maturase Location: 79551-79734 bp Feature: domain Description: HNHc Note: nucleases Location: 79962-80118 bp Feature: domain Description: HNHc Note: nucleases Location: 79962 -80118 bp Feature: gene Location: 80150-80614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80156-80522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80156-8052 2 bp Feature: gene Location: 80729-81259 bp Feature: domain Description: RVT_N Location: 80798-81041 bp Feature: domain Description: RVT_N Location: 80798-81041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81086-81254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81086-812 54 bp Feature: gene Location: 82941-83336 bp Feature: domain Description: rpsI Location: 82953-83334 bp Feature: domain Description: rpsI Location: 82 953-83334 bp Feature: gene Location: 83353-83781 bp Feature: domain Description: rplM Location: 83356-83779 bp Feature: domain Description: rplM Location: 83356-83779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655), rpsI (PRK00132), rplM (PRK09216)