myRT

myRT report for GCA_001930365.1_ASM193036v1

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Seq: LQEB01000005.1 Mannheimia haemolytica strain 2436MH isolate swab isolate 1 contig_5, whole genome shotgun sequence (133906 bp)
Overview 1 RT 1: 47274-51672 bp Neighborhood of RT #1 [47274, 51672] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 47274-47702 bp Feature: domain Description: rplM Location: 47277-47700 bp Feature: domain Description: rplM Location: 47277-47700 bp Feature: gene Location: 47719-48114 bp Feature: domain Description: rpsI Location: 47731-48112 bp Feature: domain Description: rpsI Location: 47731 -481 1 2 bp Feature: gene Location: 49796-50326 bp Feature: domain Description: RVT_N Location: 49865-50108 bp Feature: domain Description: RVT_N Location: 49865-501 08 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50153-50321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 53-50321 bp Feature: gene Location: 50441-50905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50447-50813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50447-5081 3 bp Feature: gene Location: 50902-51516 bp Feature: domain Description: GIIM Note: maturase Location: 50914-51097 bp Feature: domain Description: GIIM Note: maturase Location: 5091 4-51 097 bp Feature: domain Description: HNHc Note: nucleases Location: 51325-51481 bp Feature: domain Description: HNHc Note: nucleases Location: 51 325-51 481 bp Feature: gene Location: 51538-51672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LQEB01000087.1 Mannheimia haemolytica strain 2436MH isolate swab isolate 1 contig_87, whole genome shotgun sequence (102005 bp)
Overview 1 RT 1: 79887-91690 bp Neighborhood of RT #1 [79887, 91695] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 79887-83912 bp Feature: domain Description: rpoB Location: 79911-83901 bp Feature: domain Description: rpoB Location: 79911-83901 bp Feature: gene Location: 84175-88458 bp Feature: domain Description: PRK00566 Location: 84211-88300 bp Feature: domain Description: PRK00566 Location: 842 11-88300 bp Feature: gene Location: 88853-90163 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89048-89867 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89048-89867 bp Feature: gene Location: 90166-90348 bp Feature: gene Location: 90415-91695 bp Feature: domain Description: PRK00062 Location: 90421-91690 bp Feature: domain Description: PRK00062 Location: 9042 1-91690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)