myRT

myRT report for GCA_001930475.1_ASM193047v1

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Seq: LQEK01000074.1 Mannheimia haemolytica strain 2578MH isolate swab isolate 1 contig_74, whole genome shotgun sequence (37652 bp)
Overview 1 RT 1: 15534-27337 bp Neighborhood of RT #1 [15534, 27342] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15534-19559 bp Feature: domain Description: rpoB Location: 15558-19548 bp Feature: domain Description: rpoB Location: 1 5558-1 9548 bp Feature: gene Location: 19822-24105 bp Feature: domain Description: PRK00566 Location: 19858-23947 bp Feature: domain Description: PRK00566 Location: 1 9858-23947 bp Feature: gene Location: 24500-25810 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24695-25514 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24695-2551 4 bp Feature: gene Location: 25813-25995 bp Feature: gene Location: 26062-27342 bp Feature: domain Description: PRK00062 Location: 26068-27337 bp Feature: domain Description: PRK00062 Location: 26068-27337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQEK01000089.1 Mannheimia haemolytica strain 2578MH isolate swab isolate 1 contig_89, whole genome shotgun sequence (87910 bp)
Overview 1 RT 1: 82283-86679 bp Neighborhood of RT #1 [82283, 86681] GIIM HNHc RVT-GII RVT_N RVT-GII rpsI rplM Feature: gene Location: 82283-82417 bp Feature: gene Location: 82439-83053 bp Feature: domain Description: GIIM Note: maturase Location: 82451-82634 bp Feature: domain Description: GIIM Note: maturase Location: 82 451-82 634 bp Feature: domain Description: HNHc Note: nucleases Location: 82862-83018 bp Feature: domain Description: HNHc Note: nucleases Location: 82 862 -83018 bp Feature: gene Location: 83050-83514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83056-83422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83056-8342 2 bp Feature: gene Location: 83629-84159 bp Feature: domain Description: RVT_N Location: 83698-83941 bp Feature: domain Description: RVT_N Location: 83698-83941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83986-84154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83986-84154 bp Feature: gene Location: 85841-86236 bp Feature: domain Description: rpsI Location: 85853-86234 bp Feature: domain Description: rpsI Location: 85853-862 34 bp Feature: gene Location: 86253-86681 bp Feature: domain Description: rplM Location: 86256-86679 bp Feature: domain Description: rplM Location: 862 56-86679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT-GII, RVT_N (pfam13655), rpsI (PRK00132), rplM (PRK09216)