myRT

myRT report for GCA_001930505.1_ASM193050v1

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Seq: LQEP01000118.1 Mannheimia haemolytica strain 2612MH isolate swab isolate 1 contig_118, whole genome shotgun sequence (43103 bp)
Overview 1 RT 1: 10311-22108 bp Neighborhood of RT #1 [10311, 22119] PRK00062 RVT-UG2 PRK00566 rpoB Feature: gene Location: 10311-11591 bp Feature: domain Description: PRK00062 Location: 10317-11586 bp Feature: domain Description: PRK00062 Location: 1 031 7-1 1 586 bp Feature: gene Location: 11658-11840 bp Feature: gene Location: 11843-13153 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12038-12857 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 2038-1 2857 bp Feature: gene Location: 13548-17831 bp Feature: domain Description: PRK00566 Location: 13584-17673 bp Feature: domain Description: PRK00566 Location: 1 3584-1 7673 bp Feature: gene Location: 18094-22119 bp Feature: domain Description: rpoB Location: 18118-22108 bp Feature: domain Description: rpoB Location: 1 81 1 8-221 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase), RVT-UG2, PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013)

Seq: LQEP01000130.1 Mannheimia haemolytica strain 2612MH isolate swab isolate 1 contig_130, whole genome shotgun sequence (84267 bp)
Overview 1 RT 1: 1214-5612 bp Neighborhood of RT #1 [1214, 5612] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 1214-1642 bp Feature: domain Description: rplM Location: 1217-1640 bp Feature: domain Description: rplM Location: 12 17-1640 bp Feature: gene Location: 1659-2054 bp Feature: domain Description: rpsI Location: 1671-2052 bp Feature: domain Description: rpsI Location: 1671-2 052 bp Feature: gene Location: 3736-4266 bp Feature: domain Description: RVT_N Location: 3805-4048 bp Feature: domain Description: RVT_N Location: 3805-4048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093-4261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4093-42 61 bp Feature: gene Location: 4381-4845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4387-4753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4387-4753 bp Feature: gene Location: 4842-5456 bp Feature: domain Description: GIIM Note: maturase Location: 4854-5037 bp Feature: domain Description: GIIM Note: maturase Location: 4854-5037 bp Feature: domain Description: HNHc Note: nucleases Location: 5265-5421 bp Feature: domain Description: HNHc Note: nucleases Location: 52 65-542 1 bp Feature: gene Location: 5478-5612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)