myRT

myRT report for GCA_001930615.1_ASM193061v1

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Seq: LQEZ01000073.1 Mannheimia haemolytica strain 2887MH isolate swab isolate 1 contig_73, whole genome shotgun sequence (102005 bp)
Overview 1 RT 1: 79887-91690 bp Neighborhood of RT #1 [79887, 91695] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 79887-83912 bp Feature: domain Description: rpoB Location: 79911-83901 bp Feature: domain Description: rpoB Location: 7991 1 -83901 bp Feature: gene Location: 84175-88458 bp Feature: domain Description: PRK00566 Location: 84211-88300 bp Feature: domain Description: PRK00566 Location: 8421 1 -88300 bp Feature: gene Location: 88853-90163 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89048-89867 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89048-89867 bp Feature: gene Location: 90166-90348 bp Feature: gene Location: 90415-91695 bp Feature: domain Description: PRK00062 Location: 90421-91690 bp Feature: domain Description: PRK00062 Location: 90421 -91 690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQEZ01000077.1 Mannheimia haemolytica strain 2887MH isolate swab isolate 1 contig_77, whole genome shotgun sequence (131345 bp)
Overview 1 RT 1: 47565-51963 bp Neighborhood of RT #1 [47565, 51963] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 47565-47993 bp Feature: domain Description: rplM Location: 47568-47991 bp Feature: domain Description: rplM Location: 47568-47991 bp Feature: gene Location: 48010-48405 bp Feature: domain Description: rpsI Location: 48022-48403 bp Feature: domain Description: rpsI Location: 4802 2 -48403 bp Feature: gene Location: 50087-50617 bp Feature: domain Description: RVT_N Location: 50156-50399 bp Feature: domain Description: RVT_N Location: 50156-50399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50444-50612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50444-50612 bp Feature: gene Location: 50732-51196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50738-51104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50738-51104 bp Feature: gene Location: 51193-51807 bp Feature: domain Description: GIIM Note: maturase Location: 51205-51388 bp Feature: domain Description: GIIM Note: maturase Location: 512 05-51388 bp Feature: domain Description: HNHc Note: nucleases Location: 51616-51772 bp Feature: domain Description: HNHc Note: nucleases Location: 51616-51772 bp Feature: gene Location: 51829-51963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)