myRT

myRT report for GCA_001932975.2_ASM193297v2

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Seq: MSJU02000016.1 Shigella dysenteriae strain BCW_4870 BCW_4870_1__paired__contig_16, whole genome shotgun sequence (6382 bp)
Overview 1 RT 1: 3713-6365 bp Neighborhood of RT #1 [3713, 6382] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3713-4195 bp Feature: domain Description: COG3547 Location: 3731-4184 bp Feature: domain Description: COG3547 Location: 3731 -41 84 bp Feature: gene Location: 4225-4416 bp Ori: OOO95861.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 4282-4393 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4282-4393 bp Feature: gene Location: 4487-5665 bp Ori: OOO95862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4634-5288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4634-5288 bp Feature: domain Description: GIIM Note: maturase Location: 5366-5588 bp Feature: domain Description: GIIM Note: maturase Location: 5366-5588 bp Feature: gene Location: 5715-6134 bp Feature: gene Location: 6191-6382 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6209-6365 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6209-6365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: MSJU02000034.1 Shigella dysenteriae strain BCW_4870 BCW_4870_1__paired__contig_34, whole genome shotgun sequence (8119 bp)
Overview 1 RT 1: 1-1809 bp Neighborhood of RT #1 [1, 2006] RVT-GII PHA02517 PHA02517 Feature: gene Location: 1-180 bp Feature: gene Location: 570-748 bp Feature: gene Location: 842-1081 bp Ori: OOO94852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1055 bp Feature: gene Location: 1276-1470 bp Feature: domain Description: PHA02517 Location: 1324-1471 bp Feature: domain Description: PHA02 517 Location: 132 4-1471 bp Feature: gene Location: 1443-2006 bp Ori: OOO94853.1 Feature: domain Description: PHA02517 Location: 1503-1809 bp Feature: domain Description: PHA02 517 Location: 1503-1809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)