myRT

myRT report for GCA_001933085.2_ASM193308v2

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Seq: MSJY02000013.1 Shigella flexneri strain BCW_4875 BCW_4875_1__paired__contig_13, whole genome shotgun sequence (5808 bp)
Overview 1 RT 1: 1-2659 bp Neighborhood of RT #1 [1, 2670] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-192 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19-175 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 9-1 75 bp Feature: gene Location: 249-668 bp Feature: gene Location: 718-1896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1 51 9 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1819 bp Feature: domain Description: GIIM Note: maturase Location: 1 597-1 81 9 bp Feature: gene Location: 1967-2158 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2024-2135 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2024-21 35 bp Feature: gene Location: 2188-2670 bp Feature: domain Description: COG3547 Location: 2206-2659 bp Feature: domain Description: COG3547 Location: 2206-2659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MSJY02000166.1 Shigella flexneri strain BCW_4875 BCW_4875_1__paired__contig_166, whole genome shotgun sequence (4596 bp)
Overview 1 RT 1: 85-2289 bp Neighborhood of RT #1 [85, 2291] RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 85-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 445-1102 bp Feature: gene Location: 1772-2098 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2024 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2 02 4 bp Feature: gene Location: 2202-2291 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2214-2289 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 2 14-2 2 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), RVT-GII