myRT

myRT report for GCA_001937985.1_ASM193798v1

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Seq: MLFF01000132.1 Escherichia coli strain OXA-LEB NODE_132_length_1544_cov_1.88426_ID_11526, whole genome shotgun sequence (1544 bp)
Overview 1 RT 1: 3-1005 bp Neighborhood of RT #1 [3, 1250] RVT-GII GIIM Feature: gene Location: 3-1250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-732 bp Feature: domain Description: GIIM Note: maturase Location: 807-1005 bp Feature: domain Description: GIIM Note: maturase Location: 807-1 005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MLFF01000473.1 Escherichia coli strain OXA-LEB NODE_473_length_675_cov_1.01277_ID_12204, whole genome shotgun sequence (675 bp)
Overview 1 RT 1: 3-285 bp Neighborhood of RT #1 [3, 674] RVT-UG17 Feature: gene Location: 3-674 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6-285 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6-2 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17

Seq: MLFF01000630.1 Escherichia coli strain OXA-LEB NODE_630_length_522_cov_0.853165_ID_12504, whole genome shotgun sequence (522 bp)
Overview 1 RT 1: 3-357 bp Neighborhood of RT #1 [3, 359] RVT-UG17 Feature: gene Location: 3-359 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 231-357 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23 1-3 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17

Seq: MLFF01000007.1 Escherichia coli strain OXA-LEB NODE_7_length_239163_cov_41.5021_ID_11250, whole genome shotgun sequence (239163 bp)
Overview 1 RT 1: 16629-21966 bp Neighborhood of RT #1 [16629, 21974] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Feature: gene Location: 16629-17546 bp Feature: domain Description: PFLE_PFLC Location: 16665-17520 bp Feature: domain Description: PFLE_PFLC Location: 16665-17520 bp Feature: gene Location: 17683-18588 bp Feature: gene Location: 19074-19613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19404-19482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194 04 -194 82 bp Feature: gene Location: 19641-20162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19647-19929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964 7-19929 bp Feature: domain Description: GIIM Note: maturase Location: 19977-20157 bp Feature: domain Description: GIIM Note: maturase Location: 19977-20157 bp Feature: gene Location: 20484-20672 bp Feature: gene Location: 20712-21974 bp Feature: domain Description: YesM Location: 21225-21966 bp Feature: domain Description: YesM Location: 21225-21966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: MLFF01000080.1 Escherichia coli strain OXA-LEB NODE_80_length_2446_cov_1.43338_ID_11400, whole genome shotgun sequence (2446 bp)
Overview 1 RT 1: 211-2361 bp Neighborhood of RT #1 [211, 2444] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 211-420 bp Feature: gene Location: 555-2444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 822-165 3 bp Feature: domain Description: Intron_maturas2 Location: 1767-2025 bp Feature: domain Description: Intron_maturas2 Location: 1767-2025 bp Feature: domain Description: HNHc Note: nucleases Location: 2199-2361 bp Feature: domain Description: HNHc Note: nucleases Location: 2199-2361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)