myRT

myRT report for GCA_001939115.1_ASM193911v1

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Seq: MQTZ01000033.1 Leptolyngbya sp. 'hensonii' Contig_8, whole genome shotgun sequence (11063 bp)
Overview 1 RT 1: 1966-6315 bp Neighborhood of RT #1 [1966, 6335] Uma2 YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 1966-2541 bp Ori: OLP18373.1 Feature: domain Description: Uma2 Location: 2026-2449 bp Feature: domain Description: Uma2 Location: 2026-2449 bp Feature: gene Location: 2776-3684 bp Ori: OLP18374.1 Feature: domain Description: YfmG Location: 2824-3664 bp Feature: domain Description: YfmG Location: 2824-3664 bp Feature: gene Location: 4000-5064 bp Ori: OLP18375.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4210-4849 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 421 0-4849 bp Feature: gene Location: 5061-5417 bp Ori: OLP18376.1 Feature: domain Description: Avd_like Location: 5094-5397 bp Feature: domain Description: Avd_like Location: 5094-5397 bp Feature: gene Location: 5496-6335 bp Ori: OLP18380.1 Feature: domain Description: YfmG Location: 5580-6315 bp Feature: domain Description: YfmG Location: 5580-631 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: MQTZ01000069.1 Leptolyngbya sp. 'hensonii' Contig_120, whole genome shotgun sequence (16219 bp)
Overview 1 RT 1: 618-6062 bp Neighborhood of RT #1 [618, 6076] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 618-1433 bp Ori: OLP15443.1 Feature: domain Description: YfmG Location: 681-1419 bp Feature: domain Description: YfmG Location: 681-1419 bp Feature: gene Location: 1927-3015 bp Ori: OLP15444.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2137-2776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 137-2 776 bp Feature: gene Location: 3012-3362 bp Ori: OLP15445.1 Feature: domain Description: Avd_like Location: 3030-3336 bp Feature: domain Description: Avd_like Location: 3030-3336 bp Feature: gene Location: 3494-6076 bp Ori: OLP15446.1 Feature: domain Description: YfmG Location: 5249-6062 bp Feature: domain Description: YfmG Location: 52 49-6062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: MQTZ01000046.1 Leptolyngbya sp. 'hensonii' Contig_247, whole genome shotgun sequence (153959 bp)
Overview 1 RT 1: 435-5522 bp Neighborhood of RT #1 [435, 5977] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csx1_III-U Cas10_III Cas10_III Feature: gene Location: 435-710 bp Ori: OLP16750.1 Feature: domain Description: Cas2_I_II_III Location: 444-672 bp Feature: domain Description: Cas2_I_II_III Location: 444-672 bp Feature: gene Location: 801-2885 bp Ori: OLP16878.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1008-1614 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1008-1614 bp Feature: domain Description: Cas1_I-II-III Location: 1890-2847 bp Feature: domain Description: Cas1_I-II-III Location: 1890-2847 bp Feature: gene Location: 2937-3782 bp Ori: OLP16751.1 Feature: domain Description: Csx1_III-U Location: 3543-3720 bp Feature: domain Description: Csx1_III-U Location: 3 543 -3 720 bp Feature: gene Location: 4187-5977 bp Ori: OLP16752.1 Feature: domain Description: Cas10_III Location: 4205-4301 bp Feature: domain Description: Cas10_III Location: 4205-43 01 bp Feature: domain Description: Cas10_III Location: 5048-5522 bp Feature: domain Description: Cas10_III Location: 5048-5522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csx1_III-U (cl21570), Cas10_III (cl21742)

Seq: MQTZ01000030.1 Leptolyngbya sp. 'hensonii' Contig_49, whole genome shotgun sequence (51441 bp)
Overview 1 RT 1: 38920-45885 bp Neighborhood of RT #1 [38920, 45885] COG1808 WGR PQQ PQQ RVT-Retrons Feature: gene Location: 38920-39933 bp Ori: OLP18449.1 Feature: domain Description: COG1808 Location: 38980-39889 bp Feature: domain Description: COG1808 Location: 38980-39889 bp Feature: gene Location: 40143-41582 bp Ori: OLP18450.1 Feature: domain Description: WGR Location: 40176-40419 bp Feature: domain Description: WGR Location: 4 0176-4 04 19 bp Feature: domain Description: PQQ Location: 40470-41049 bp Feature: domain Description: PQQ Location: 4 04 70-4 104 9 bp Feature: domain Description: PQQ Location: 41085-41265 bp Feature: domain Description: PQQ Location: 4 1085-4 1265 bp Feature: gene Location: 42209-43627 bp Ori: OLP18435.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42761-43379 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 2761-4 3379 bp Feature: gene Location: 43902-45566 bp Feature: gene Location: 45613-45885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1808 (Uncharacterized membrane protein ), WGR (smart00773), PQQ (smart00564), RVT-Retrons

Seq: MQTZ01000031.1 Leptolyngbya sp. 'hensonii' Contig_300, whole genome shotgun sequence (16071 bp)
Overview 1 RT 1: 9665-12651 bp Neighborhood of RT #1 [9665, 12707] YfmG YfmG RVT-DGRs Avd_like COG2442 Feature: gene Location: 9665-10537 bp Ori: OLP18409.1 Feature: domain Description: YfmG Location: 9734-10517 bp Feature: domain Description: YfmG Location: 9734-105 17 bp Feature: gene Location: 10730-10834 bp Feature: domain Description: YfmG Location: 10733-10835 bp Feature: domain Description: YfmG Location: 10733-10835 bp Feature: gene Location: 10859-11917 bp Ori: OLP18404.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11069-11711 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11069-11711 bp Feature: gene Location: 11914-12255 bp Ori: OLP18405.1 Feature: domain Description: Avd_like Location: 11932-12238 bp Feature: domain Description: Avd_like Location: 11932-12238 bp Feature: gene Location: 12432-12707 bp Ori: OLP18406.1 Feature: domain Description: COG2442 Location: 12444-12651 bp Feature: domain Description: COG2442 Location: 12444-1265 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), COG2442 (Uncharacterized conserved protein, DUF433 family )

Seq: MQTZ01000062.1 Leptolyngbya sp. 'hensonii' Contig_198, whole genome shotgun sequence (40580 bp)
Overview 1 RT 1: 34343-40258 bp Neighborhood of RT #1 [34343, 40258] RVT_N RVT-GII GIIM HNHc PRK11524 Feature: gene Location: 34343-34684 bp Feature: gene Location: 35122-35505 bp Feature: gene Location: 36298-37962 bp Ori: OLP15621.1 Feature: domain Description: RVT_N Location: 36343-36589 bp Feature: domain Description: RVT_N Location: 36 343-36 589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36637-37282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 6 37-37282 bp Feature: domain Description: GIIM Note: maturase Location: 37357-37588 bp Feature: domain Description: GIIM Note: maturase Location: 37357-37588 bp Feature: domain Description: HNHc Note: nucleases Location: 37729-37957 bp Feature: domain Description: HNHc Note: nucleases Location: 37729-37957 bp Feature: gene Location: 38293-39312 bp Ori: OLP15622.1 Feature: domain Description: PRK11524 Location: 38443-39184 bp Feature: domain Description: PRK11524 Location: 38443-39184 bp Feature: gene Location: 39623-40258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK11524 (adenine-specific DNA-methyltransferase)