myRT

myRT report for GCA_001940165.1_ASM194016v1

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Seq: MJHW01000001.1 Roseburia sp. 831b contig000001, whole genome shotgun sequence (557474 bp)
Overview 1 RT 1: 238014-245316 bp Neighborhood of RT #1 [238014, 245360] PrgI VirB4_CagE VirB4_CagE RVT-GII KOG4768 TraC-F-type COG2865 Feature: gene Location: 238014-238523 bp Feature: domain Description: PrgI Location: 238029-238296 bp Feature: domain Description: PrgI Location: 238029-238296 bp Feature: gene Location: 238640-240070 bp Feature: domain Description: VirB4_CagE Location: 238706-239105 bp Feature: domain Description: VirB4_CagE Location: 238706-2391 05 bp Feature: domain Description: VirB4_CagE Location: 239324-240068 bp Feature: domain Description: VirB4_CagE Location: 239324-240068 bp Feature: gene Location: 240817-242640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241117-241816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 1 7-241 81 6 bp Feature: domain Description: KOG4768 Location: 241951-242056 bp Feature: domain Description: KOG4768 Location: 241 951 -242056 bp Feature: gene Location: 242736-243680 bp Feature: domain Description: TraC-F-type Location: 242907-243471 bp Feature: domain Description: TraC-F-type Location: 242907-243471 bp Feature: gene Location: 243954-245360 bp Feature: domain Description: COG2865 Location: 244014-245316 bp Feature: domain Description: COG2865 Location: 24401 4-24531 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), TraC-F-type (TIGR02746), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: MJHW01000023.1 Roseburia sp. 831b contig000023, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 1-1530 bp Neighborhood of RT #1 [1, 1691] RVT-GII GIIM Feature: gene Location: 1-207 bp Feature: gene Location: 279-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630-1251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630-12 51 bp Feature: domain Description: GIIM Note: maturase Location: 1308-1530 bp Feature: domain Description: GIIM Note: maturase Location: 1308-1530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MJHW01000008.1 Roseburia sp. 831b contig000008, whole genome shotgun sequence (492834 bp)
Overview 1 RT 1: 147046-153321 bp 2 RT 2: 168378-172470 bp 3 RT 3: 462947-469400 bp Neighborhood of RT #1 [147046, 153410] PurR MATE_like_8 RVT-GII GIIM MATE_MepA_like HTH_MARR Neighborhood of RT #2 [168378, 172470] HTH_17 HipB RVT-Retrons Neighborhood of RT #3 [462947, 469447] SkfB Zn_dep_PLPC RVT-GII GIIM PRK08410 Pat_hypo_Ecoli_yjju_like Feature: gene Location: 147046-148056 bp Feature: domain Description: PurR Location: 147067-148051 bp Feature: domain Description: PurR Location: 147067-148051 bp Feature: gene Location: 148056-149387 bp Feature: domain Description: MATE_like_8 Location: 148071-149373 bp Feature: domain Description: MATE_like_8 Location: 148071-1493 73 bp Feature: gene Location: 149540-150952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149891-150512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149891-150512 bp Feature: domain Description: GIIM Note: maturase Location: 150569-150791 bp Feature: domain Description: GIIM Note: maturase Location: 150569-150791 bp Feature: gene Location: 151613-152968 bp Feature: domain Description: MATE_MepA_like Location: 151643-152933 bp Feature: domain Description: MATE_MepA_like Location: 151643 -15293 3 bp Feature: gene Location: 152961-153410 bp Feature: domain Description: HTH_MARR Location: 153024-153321 bp Feature: domain Description: HTH_MARR Location: 153 024-153 3 21 bp Feature: gene Location: 168378-168557 bp Feature: domain Description: HTH_17 Location: 168396-168465 bp Feature: domain Description: HTH_17 Location: 1683 96-168465 bp Feature: gene Location: 168762-169337 bp Feature: domain Description: HipB Location: 168771-169128 bp Feature: domain Description: HipB Location: 168771-169128 bp Feature: gene Location: 169571-170494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169613-170192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169613 -170192 bp Feature: gene Location: 170487-171545 bp Feature: gene Location: 171784-172470 bp Feature: gene Location: 462947-464344 bp Feature: domain Description: SkfB Location: 463253-464147 bp Feature: domain Description: SkfB Location: 463 253 -464147 bp Feature: gene Location: 464704-465660 bp Feature: domain Description: Zn_dep_PLPC Location: 464722-465151 bp Feature: domain Description: Zn_dep_PLPC Location: 464722-465151 bp Feature: gene Location: 465732-467144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466083-466704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466083 -466704 bp Feature: domain Description: GIIM Note: maturase Location: 466761-466983 bp Feature: domain Description: GIIM Note: maturase Location: 466761-466983 bp Feature: gene Location: 467651-468589 bp Feature: domain Description: PRK08410 Location: 467654-468584 bp Feature: domain Description: PRK08410 Location: 467654-468584 bp Feature: gene Location: 468596-469447 bp Feature: domain Description: Pat_hypo_Ecoli_yjju_like Location: 468617-469400 bp Feature: domain Description: Pat_hypo_Ecoli_yjju_like Location: 468617-469400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), MATE_like_8 (cd13134), RVT-GII, GIIM (pfam08388), MATE_MepA_like (cd13143), HTH_MARR (smart00347), HTH_17 (pfam12728), HipB (COG1396), RVT-Retrons, SkfB (COG0535)
Zn_dep_PLPC (smart00770), PRK08410 (D-2-hydroxyacid dehydrogenase), Pat_hypo_Ecoli_yjju_like (cd07208)

Seq: MJHW01000009.1 Roseburia sp. 831b contig000009, whole genome shotgun sequence (242087 bp)
Overview 1 RT 1: 151006-156071 bp Neighborhood of RT #1 [151006, 156079] RibD ARA1 RVT-GII GIIM hemeryth_dom HDGYP HDGYP Feature: gene Location: 151006-151680 bp Feature: domain Description: RibD Location: 151243-151675 bp Feature: domain Description: RibD Location: 15124 3-151675 bp Feature: gene Location: 151680-152350 bp Feature: domain Description: ARA1 Location: 151683-152184 bp Feature: domain Description: ARA1 Location: 151683-152184 bp Feature: gene Location: 152518-153801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152728-153343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152728-15334 3 bp Feature: domain Description: GIIM Note: maturase Location: 153403-153625 bp Feature: domain Description: GIIM Note: maturase Location: 1534 03-153625 bp Feature: gene Location: 154337-154735 bp Feature: domain Description: hemeryth_dom Location: 154355-154724 bp Feature: domain Description: hemeryth_dom Location: 154 355-154 724 bp Feature: gene Location: 154847-156079 bp Feature: domain Description: HDGYP Location: 154946-155435 bp Feature: domain Description: HDGYP Location: 154 94 6-1554 35 bp Feature: domain Description: HDGYP Location: 155531-156071 bp Feature: domain Description: HDGYP Location: 155531-156071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RibD (COG1985), ARA1 (COG0656), RVT-GII, GIIM (pfam08388), hemeryth_dom (TIGR02481), HDGYP (COG2206)