myRT

myRT report for GCA_001940225.1_ASM194022v1

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Seq: MJID01000015.1 Roseburia sp. 499 contig000015, whole genome shotgun sequence (154712 bp)
Overview 1 RT 1: 1-4526 bp Neighborhood of RT #1 [1, 4630] group_II_RT_mat RVT-GII GIIM LRAT Feature: gene Location: 1-195 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37-190 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37-1 90 bp Feature: gene Location: 742-2136 bp Ori: OLR53827.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 060-1 684 bp Feature: domain Description: GIIM Note: maturase Location: 1741-1960 bp Feature: domain Description: GIIM Note: maturase Location: 1 741 -1 960 bp Feature: gene Location: 2650-3609 bp Feature: gene Location: 3845-4630 bp Ori: OLR53829.1 Feature: domain Description: LRAT Location: 4124-4526 bp Feature: domain Description: LRAT Location: 41 24-4526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), LRAT (pfam04970)

Seq: MJID01000010.1 Roseburia sp. 499 contig000010, whole genome shotgun sequence (567134 bp)
Overview 1 RT 1: 392151-398398 bp Neighborhood of RT #1 [392151, 398628] NTP_transf_5 TraC-F-type RVT-GII KOG4768 VirB4_CagE PrgI Feature: gene Location: 392151-392645 bp Ori: OLR57627.1 Feature: domain Description: NTP_transf_5 Location: 392169-392421 bp Feature: domain Description: NTP_transf_5 Location: 392 169-392 42 1 bp Feature: gene Location: 392986-393927 bp Feature: domain Description: TraC-F-type Location: 393163-393721 bp Feature: domain Description: TraC-F-type Location: 393163-39372 1 bp Feature: gene Location: 394023-395846 bp Ori: OLR57628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394323-395022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39432 3-39502 2 bp Feature: domain Description: KOG4768 Location: 395157-395262 bp Feature: domain Description: KOG4768 Location: 395157-3952 62 bp Feature: gene Location: 396593-398023 bp Feature: domain Description: VirB4_CagE Location: 397274-398018 bp Feature: domain Description: VirB4_CagE Location: 3972 74-398018 bp Feature: gene Location: 398116-398628 bp Ori: OLR57629.1 Feature: domain Description: PrgI Location: 398131-398398 bp Feature: domain Description: PrgI Location: 398131-398398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_5 (pfam14907), TraC-F-type (TIGR02746), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), VirB4_CagE (TIGR00929), PrgI (pfam12666)

Seq: MJID01000006.1 Roseburia sp. 499 contig000006, whole genome shotgun sequence (277316 bp)
Overview 1 RT 1: 16738-25508 bp Neighborhood of RT #1 [16738, 25513] COG0610 COG1479 COG3586 RVT-UG2 COG2865 Feature: gene Location: 16738-19932 bp Ori: OLR61948.1 Feature: domain Description: COG0610 Location: 16759-19735 bp Feature: domain Description: COG0610 Location: 16759-1973 5 bp Feature: gene Location: 19945-22011 bp Ori: OLR61725.1 Feature: domain Description: COG1479 Location: 19972-21229 bp Feature: domain Description: COG1479 Location: 19972-21229 bp Feature: domain Description: COG3586 Location: 21706-22000 bp Feature: domain Description: COG3 586 Location: 21706-22000 bp Feature: gene Location: 22332-23627 bp Ori: OLR61726.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22518-23328 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 22518-23 3 28 bp Feature: gene Location: 23660-23908 bp Feature: gene Location: 24095-25513 bp Ori: OLR61728.1 Feature: domain Description: COG2865 Location: 24098-25508 bp Feature: domain Description: COG2865 Location: 24098-25508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), COG3586 (Predicted transport protein ), RVT-UG2, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: MJID01000007.1 Roseburia sp. 499 contig000007, whole genome shotgun sequence (535115 bp)
Overview 1 RT 1: 269259-280933 bp Neighborhood of RT #1 [269259, 280941] PRK09776 GGDEF EAL pyruv_ox_red RVT-GII GIIM RVT-GII GIIM MCP_signal CZB Prefoldin Prefoldin Feature: gene Location: 269259-271469 bp Ori: OLR61320.1 Feature: domain Description: PRK09776 Location: 269400-269679 bp Feature: domain Description: PRK09776 Location: 2694 00-269679 bp Feature: domain Description: GGDEF Location: 270213-270654 bp Feature: domain Description: GGDEF Location: 270213-270654 bp Feature: domain Description: EAL Location: 270732-271440 bp Feature: domain Description: EAL Location: 270732-2714 4 0 bp Feature: gene Location: 271613-275149 bp Ori: OLR61321.1 Feature: domain Description: pyruv_ox_red Location: 271628-275126 bp Feature: domain Description: pyruv_ox_red Location: 271628-275126 bp Feature: gene Location: 275614-277032 bp Ori: OLR61322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275965-276586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275965-276586 bp Feature: domain Description: GIIM Note: maturase Location: 276640-276868 bp Feature: domain Description: GIIM Note: maturase Location: 27664 0-276868 bp Feature: gene Location: 277582-278823 bp Ori: OLR61323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277786-278443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277786-2784 4 3 bp Feature: domain Description: GIIM Note: maturase Location: 278524-278743 bp Feature: domain Description: GIIM Note: maturase Location: 278524 -27874 3 bp Feature: gene Location: 279435-280328 bp Ori: OLR61324.1 Feature: domain Description: MCP_signal Location: 279471-279915 bp Feature: domain Description: MCP_signal Location: 2794 71-279915 bp Feature: domain Description: CZB Location: 279990-280182 bp Feature: domain Description: CZB Location: 279990-280182 bp Feature: gene Location: 280519-280941 bp Ori: OLR61325.1 Feature: domain Description: Prefoldin Location: 280546-280717 bp Feature: domain Description: Prefoldin Location: 28054 6-280717 bp Feature: domain Description: Prefoldin Location: 280804-280933 bp Feature: domain Description: Prefoldin Location: 280804 -280933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09776 (putative diguanylate cyclase; Provisional), GGDEF (TIGR00254), EAL (smart00052), pyruv_ox_red (TIGR02176), RVT-GII, GIIM (pfam08388), MCP_signal (cl39097), CZB (pfam13682), Prefoldin (pfam02996)