myRT

myRT report for GCA_001940235.1_ASM194023v1

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Seq: MJIE01000001.1 Eubacterium sp. 68-3-10 unitig_0:quiver, whole genome shotgun sequence (2803543 bp)
Overview 1 RT 1: 1338848-1345040 bp 2 RT 2: 1518266-1525158 bp 3 RT 3: 1988409-1992893 bp 4 RT 4: 2532960-2536839 bp 5 RT 5: 2572204-2580975 bp 6 RT 6: 2746301-2750078 bp Neighborhood of RT #1 [1338848, 1345042] COG1373 SLC6sbd_Tyt1-Like RVT-GII GIIM recR PRK00153 Neighborhood of RT #2 [1518266, 1525328] RVT-GII GIIM Lon WrbA Neighborhood of RT #3 [1988409, 1992893] Integrase_DNA Phage_int_SAM_3 INT_ICEBs1_C_like tRNA_bind_EcMetRS_like RVT-GII RVT-GII group_II_RT_mat COG2865 Neighborhood of RT #4 [2532960, 2536853] VOC_BsYyaH RVT-GII GIIM AcrR Cys_rich_KTR Neighborhood of RT #5 [2572204, 2581022] SPFH_like_u2 COG4877 RVT-GII DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RocR antiport_nhaC Neighborhood of RT #6 [2746301, 2750078] PBECR3 RVT-GII GIIM Feature: gene Location: 1338848-1340122 bp Ori: OLR55726.1 Feature: domain Description: COG1373 Location: 1338869-1339970 bp Feature: domain Description: COG1 373 Location: 1 338869-1 339970 bp Feature: gene Location: 1340693-1342114 bp Ori: OLR55727.1 Feature: domain Description: SLC6sbd_Tyt1-Like Location: 1340717-1342061 bp Feature: domain Description: SLC6sbd_Tyt1 -Like Location: 1 34071 7-1 342061 bp Feature: gene Location: 1342249-1343643 bp Ori: OLR55728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342567-1343191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 342567-1 3431 91 bp Feature: domain Description: GIIM Note: maturase Location: 1343248-1343458 bp Feature: domain Description: GIIM Note: maturase Location: 1 343248-1 343458 bp Feature: gene Location: 1344133-1344738 bp Ori: OLR55729.1 Feature: domain Description: recR Location: 1344145-1344730 bp Feature: domain Description: recR Location: 1 3441 45-1 344730 bp Feature: gene Location: 1344746-1345042 bp Ori: OLR56964.1 Feature: domain Description: PRK00153 Location: 1344758-1345040 bp Feature: domain Description: PRK001 53 Location: 1 344758-1 345040 bp Feature: gene Location: 1518266-1519450 bp Feature: gene Location: 1519883-1520158 bp Feature: gene Location: 1520310-1521704 bp Ori: OLR55862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520628-1521252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 520628-1 521 252 bp Feature: domain Description: GIIM Note: maturase Location: 1521309-1521519 bp Feature: domain Description: GIIM Note: maturase Location: 1 521 309-1 521 51 9 bp Feature: gene Location: 1522191-1524575 bp Ori: OLR55863.1 Feature: domain Description: Lon Location: 1522197-1524564 bp Feature: domain Description: Lon Location: 1 5221 97-1 524564 bp Feature: gene Location: 1524744-1525328 bp Ori: OLR55864.1 Feature: domain Description: WrbA Location: 1524756-1525158 bp Feature: domain Description: WrbA Location: 1 524756-1 5251 58 bp Feature: gene Location: 1988409-1989638 bp Ori: OLR56236.1 Feature: domain Description: Integrase_DNA Location: 1988415-1988577 bp Feature: domain Description: Integrase_DNA Location: 1 98841 5-1 988577 bp Feature: domain Description: Phage_int_SAM_3 Location: 1988616-1988781 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 98861 6-1 988781 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1988967-1989573 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 988967-1 989573 bp Feature: gene Location: 1989785-1990204 bp Ori: OLR56237.1 Feature: domain Description: tRNA_bind_EcMetRS_like Location: 1989875-1990199 bp Feature: domain Description: tRNA_bind_EcMetRS_like Location: 1 989875-1 9901 99 bp Feature: gene Location: 1990419-1990622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990518-1990623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 99051 8-1 990623 bp Feature: gene Location: 1990692-1991012 bp Ori: OLR56238.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990698-1990758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 990698-1 990758 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1990764-1990929 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 990764-1 990929 bp Feature: gene Location: 1991108-1992634 bp Ori: OLR56239.1 Feature: domain Description: COG2865 Location: 1991132-1992593 bp Feature: domain Description: COG2865 Location: 1 991 1 32-1 992593 bp Feature: gene Location: 1992684-1992893 bp Feature: gene Location: 2532960-2533264 bp Feature: domain Description: VOC_BsYyaH Location: 2532966-2533149 bp Feature: domain Description: VOC_BsYyaH Location: 2532966-25331 49 bp Feature: gene Location: 2533298-2533768 bp Feature: gene Location: 2534474-2535868 bp Ori: OLR56654.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534792-2535416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534792-253541 6 bp Feature: domain Description: GIIM Note: maturase Location: 2535473-2535683 bp Feature: domain Description: GIIM Note: maturase Location: 2535473-2535683 bp Feature: gene Location: 2536033-2536659 bp Ori: OLR56655.1 Feature: domain Description: AcrR Location: 2536045-2536627 bp Feature: domain Description: AcrR Location: 2536045-2536627 bp Feature: gene Location: 2536656-2536853 bp Ori: OLR56656.1 Feature: domain Description: Cys_rich_KTR Location: 2536683-2536839 bp Feature: domain Description: Cys_rich_KTR Location: 2536683-2536839 bp Feature: gene Location: 2572204-2573214 bp Ori: OLR56680.1 Feature: domain Description: SPFH_like_u2 Location: 2572360-2573188 bp Feature: domain Description: SPFH_like_u2 Location: 2572360-25731 88 bp Feature: gene Location: 2573315-2573509 bp Ori: OLR56681.1 Feature: domain Description: COG4877 Location: 2573321-2573495 bp Feature: domain Description: COG4877 Location: 2573321 -2573495 bp Feature: gene Location: 2573984-2574478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2574302-2574473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2574302-2574473 bp Feature: gene Location: 2574587-2575798 bp Ori: OLR56682.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 2574599-2575067 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2574599-2575067 bp Feature: domain Description: Transposase_20 Location: 2575415-2575664 bp Feature: domain Description: Transposase_20 Location: 257541 5-2575664 bp Feature: gene Location: 2576064-2576990 bp Ori: OLR56683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2576079-2576538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2576079-2576538 bp Feature: domain Description: GIIM Note: maturase Location: 2576595-2576805 bp Feature: domain Description: GIIM Note: maturase Location: 2576595-2576805 bp Feature: gene Location: 2577270-2579357 bp Ori: OLR56684.1 Feature: domain Description: RocR Location: 2578380-2579352 bp Feature: domain Description: RocR Location: 2578380-2579352 bp Feature: gene Location: 2579538-2581022 bp Ori: OLR56685.1 Feature: domain Description: antiport_nhaC Location: 2579571-2580975 bp Feature: domain Description: antiport_nhaC Location: 2579571 -2580975 bp Feature: gene Location: 2746301-2746507 bp Feature: gene Location: 2746676-2746948 bp Ori: OLR56823.1 Feature: domain Description: PBECR3 Location: 2746682-2746859 bp Feature: domain Description: PBECR3 Location: 2746682-2746859 bp Feature: gene Location: 2747547-2748941 bp Ori: OLR56824.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2747865-2748489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2747865-2748489 bp Feature: domain Description: GIIM Note: maturase Location: 2748546-2748756 bp Feature: domain Description: GIIM Note: maturase Location: 2748546-2748756 bp Feature: gene Location: 2749087-2749302 bp Feature: gene Location: 2749356-2750078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), SLC6sbd_Tyt1-Like (cd10336), RVT-GII, GIIM (pfam08388), recR (TIGR00615), PRK00153 (YbaB/EbfC family nucleoid-associated protein), Lon (COG0466), WrbA (COG0655), Integrase_DNA (pfam02920), Phage_int_SAM_3 (pfam14659)
INT_ICEBs1_C_like (cd01189), tRNA_bind_EcMetRS_like (cd02800), group_II_RT_mat (TIGR04416), COG2865 (Predicted transcriptional regulator, contains HTH domain ), VOC_BsYyaH (cd07241), AcrR (COG1309), Cys_rich_KTR (pfam14205), SPFH_like_u2 (cd03402), COG4877 (Uncharacterized protein ), DEDD_Tnp_IS110 (pfam01548)
Transposase_20 (pfam02371), RocR (COG3829), antiport_nhaC (TIGR00931), PBECR3 (pfam18812)