myRT

myRT report for GCA_001942065.1_ASM194206v1

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Seq: MKGW01000137.1 Escherichia coli strain 85H4 85h4_contig_9_(1..43211)_consensus, whole genome shotgun sequence (43211 bp)
Overview 1 RT 1: 1-1224 bp 2 RT 2: 36677-43212 bp Neighborhood of RT #1 [1, 1298] RVT-GII group_II_RT_mat IS285 Neighborhood of RT #2 [36677, 43211] HEPN_Apea GerD RVT-UG1 YeeP Feature: gene Location: 1-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-382 bp Feature: gene Location: 437-677 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 449-662 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 449-662 bp Feature: gene Location: 816-1298 bp Ori: OLS80561.1 Feature: domain Description: IS285 Location: 846-1224 bp Feature: domain Description: IS285 Location: 846-1 224 bp Feature: gene Location: 36677-37777 bp Ori: OLS80592.1 Feature: domain Description: HEPN_Apea Location: 36746-37061 bp Feature: domain Description: HEPN_Apea Location: 36746-37061 bp Feature: gene Location: 38074-38508 bp Ori: OLS80593.1 Feature: domain Description: GerD Location: 38152-38266 bp Feature: domain Description: GerD Location: 381 52-38266 bp Feature: gene Location: 38517-42206 bp Ori: OLS80594.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 39129-39639 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 391 29-39639 bp Feature: gene Location: 42810-43211 bp Feature: domain Description: YeeP Location: 42813-43212 bp Feature: domain Description: YeeP Location: 4281 3-4321 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328), HEPN_Apea (pfam18739), GerD (pfam17898), RVT-UG1, YeeP (COG3596)

Seq: MKGW01000089.1 Escherichia coli strain 85H4 85h4_contig_56_(1..22298)_consensus, whole genome shotgun sequence (22298 bp)
Overview 1 RT 1: 12948-17366 bp Neighborhood of RT #1 [12948, 17366] fecE RVT-GII GIIM Feature: gene Location: 12948-13715 bp Ori: OLS82609.1 Feature: domain Description: fecE Location: 12951-13713 bp Feature: domain Description: fecE Location: 12 951-13713 bp Feature: gene Location: 14273-14530 bp Feature: gene Location: 15181-16689 bp Ori: OLS82618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15439-16171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15439-16171 bp Feature: domain Description: GIIM Note: maturase Location: 16246-16444 bp Feature: domain Description: GIIM Note: maturase Location: 162 46-16444 bp Feature: gene Location: 16658-17083 bp Feature: gene Location: 16998-17366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecE (PRK11231), RVT-GII, GIIM (pfam08388)