myRT

myRT report for GCA_001942085.1_ASM194208v1

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Seq: MKGT01000020.1 Escherichia coli strain 78B5 78b5_contig_118_(1..16469)_consensus, whole genome shotgun sequence (16469 bp)
Overview 1 RT 1: 4989-8082 bp Neighborhood of RT #1 [4989, 8082] RVT-GII GIIM PHA02517 Feature: gene Location: 4989-5357 bp Feature: gene Location: 5272-5697 bp Feature: gene Location: 5666-7174 bp Ori: OLS81542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5924-6656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5924-6656 bp Feature: domain Description: GIIM Note: maturase Location: 6731-6929 bp Feature: domain Description: GIIM Note: maturase Location: 6731 -6929 bp Feature: gene Location: 7255-7742 bp Feature: domain Description: PHA02517 Location: 7258-7429 bp Feature: domain Description: PHA0251 7 Location: 7258-7429 bp Feature: gene Location: 7825-8082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MKGT01000234.1 Escherichia coli strain 78B5 78b5_contig_74_(1..40050)_consensus, whole genome shotgun sequence (40050 bp)
Overview 1 RT 1: 29077-35471 bp Neighborhood of RT #1 [29077, 35494] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 29077-29994 bp Ori: OLS68946.1 Feature: domain Description: PFLE_PFLC Location: 29113-29968 bp Feature: domain Description: PFLE_PFLC Location: 2 9113-2 9968 bp Feature: gene Location: 30131-31036 bp Feature: gene Location: 31522-32061 bp Ori: OLS68948.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31852-31930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31852 -31930 bp Feature: gene Location: 32089-32610 bp Ori: OLS68949.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32095-32377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 095-32 377 bp Feature: domain Description: GIIM Note: maturase Location: 32425-32605 bp Feature: domain Description: GIIM Note: maturase Location: 32 42 5-32 605 bp Feature: gene Location: 33193-34422 bp Ori: OLS68950.1 Feature: domain Description: YesM Location: 33673-34414 bp Feature: domain Description: YesM Location: 33673-34414 bp Feature: gene Location: 34439-35494 bp Ori: OLS68951.1 Feature: domain Description: YesN Location: 34442-34832 bp Feature: domain Description: YesN Location: 34442 -34832 bp Feature: domain Description: YesN Location: 35174-35471 bp Feature: domain Description: YesN Location: 35174-35471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)

Seq: MKGT01000111.1 Escherichia coli strain 78B5 78b5_contig_1_(1..165973)_consensus, whole genome shotgun sequence (165973 bp)
Overview 1 RT 1: 137443-143552 bp Neighborhood of RT #1 [137443, 143611] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137443-138363 bp Ori: OLS79059.1 Feature: domain Description: AbiEii Location: 137485-138226 bp Feature: domain Description: AbiEii Location: 13 7485-13 8226 bp Feature: gene Location: 138350-139132 bp Ori: OLS79060.1 Feature: domain Description: AbiEi_3_N Location: 138362-138623 bp Feature: domain Description: AbiEi_3 _N Location: 13 83 62-13 8623 bp Feature: domain Description: AbiEi_3 Location: 138635-139091 bp Feature: domain Description: AbiEi_3 Location: 13 863 5-13 9091 bp Feature: gene Location: 139448-142657 bp Ori: OLS79061.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139976-140465 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 9976-140465 bp Feature: domain Description: nitrilase Location: 141971-142568 bp Feature: domain Description: nitrilase Location: 141971-142568 bp Feature: gene Location: 143004-143474 bp Feature: gene Location: 143471-143611 bp Ori: OLS79063.1 Feature: domain Description: SfsB Location: 143480-143552 bp Feature: domain Description: SfsB Location: 143 480-143 552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)