myRT

myRT report for GCA_001942145.1_ASM194214v1

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Seq: MKGX01000070.1 Escherichia coli strain 35j9 35j9_contig_164_(1..2375)_consensus, whole genome shotgun sequence (2375 bp)
Overview 1 RT 1: 30-1973 bp Neighborhood of RT #1 [30, 2218] RVT-GII GIIM Feature: gene Location: 30-401 bp Feature: gene Location: 316-741 bp Feature: gene Location: 710-2218 bp Ori: OLS98695.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1 700 bp Feature: domain Description: GIIM Note: maturase Location: 1775-1973 bp Feature: domain Description: GIIM Note: maturase Location: 1 775-1 973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MKGX01000247.1 Escherichia coli strain 35j9 35j9_contig_42_(1..165924)_consensus, whole genome shotgun sequence (165924 bp)
Overview 1 RT 1: 137394-143503 bp Neighborhood of RT #1 [137394, 143562] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137394-138314 bp Ori: OLS88031.1 Feature: domain Description: AbiEii Location: 137436-138177 bp Feature: domain Description: AbiEii Location: 137436-138177 bp Feature: gene Location: 138301-139083 bp Ori: OLS88032.1 Feature: domain Description: AbiEi_3_N Location: 138313-138574 bp Feature: domain Description: AbiEi_3_N Location: 138313-138574 bp Feature: domain Description: AbiEi_3 Location: 138586-139042 bp Feature: domain Description: AbiEi_3 Location: 138586-139042 bp Feature: gene Location: 139399-142608 bp Ori: OLS88033.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139927-140416 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13992 7-140416 bp Feature: domain Description: nitrilase Location: 141922-142519 bp Feature: domain Description: nitrilase Location: 14192 2 -142 519 bp Feature: gene Location: 142955-143425 bp Feature: gene Location: 143422-143562 bp Ori: OLS88035.1 Feature: domain Description: SfsB Location: 143431-143503 bp Feature: domain Description: SfsB Location: 143431-143503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: MKGX01000299.1 Escherichia coli strain 35j9 35j9_contig_8_(1..127755)_consensus, whole genome shotgun sequence (127755 bp)
Overview 1 RT 1: 22947-29338 bp Neighborhood of RT #1 [22947, 29364] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 22947-24002 bp Ori: OLS82312.1 Feature: domain Description: YesN Location: 22950-23340 bp Feature: domain Description: YesN Location: 22950-23 3 40 bp Feature: domain Description: YesN Location: 23682-23979 bp Feature: domain Description: YesN Location: 23 682-23 979 bp Feature: gene Location: 24019-25248 bp Ori: OLS82313.1 Feature: domain Description: YesM Location: 24499-25240 bp Feature: domain Description: YesM Location: 24499-25240 bp Feature: gene Location: 25831-26352 bp Ori: OLS82314.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25837-26119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2583 7-26119 bp Feature: domain Description: GIIM Note: maturase Location: 26167-26347 bp Feature: domain Description: GIIM Note: maturase Location: 26167-263 47 bp Feature: gene Location: 26380-26919 bp Ori: OLS82315.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26710-26788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26710-26788 bp Feature: gene Location: 27405-28310 bp Feature: gene Location: 28447-29364 bp Ori: OLS82317.1 Feature: domain Description: PFLE_PFLC Location: 28483-29338 bp Feature: domain Description: PFLE_PFLC Location: 28483 -293 3 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)