myRT

myRT report for GCA_001942175.1_ASM194217v1

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Seq: MKGZ01000003.1 Escherichia coli strain 69E6 69e6_contig_102_(1..16699)_consensus, whole genome shotgun sequence (16699 bp)
Overview 1 RT 1: 5250-8343 bp Neighborhood of RT #1 [5250, 8343] RVT-GII GIIM PHA02517 Feature: gene Location: 5250-5618 bp Feature: gene Location: 5533-5958 bp Feature: gene Location: 5927-7435 bp Ori: OLT08264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6185-6917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 85-691 7 bp Feature: domain Description: GIIM Note: maturase Location: 6992-7190 bp Feature: domain Description: GIIM Note: maturase Location: 6992-71 90 bp Feature: gene Location: 7516-8003 bp Feature: domain Description: PHA02517 Location: 7519-7690 bp Feature: domain Description: PHA0251 7 Location: 751 9-7690 bp Feature: gene Location: 8086-8343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: MKGZ01000122.1 Escherichia coli strain 69E6 69e6_contig_20_(1..165940)_consensus, whole genome shotgun sequence (165940 bp)
Overview 1 RT 1: 137412-143521 bp Neighborhood of RT #1 [137412, 143580] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137412-138332 bp Ori: OLT01773.1 Feature: domain Description: AbiEii Location: 137454-138195 bp Feature: domain Description: AbiEii Location: 137454-138195 bp Feature: gene Location: 138319-139101 bp Ori: OLT01774.1 Feature: domain Description: AbiEi_3_N Location: 138331-138592 bp Feature: domain Description: AbiEi_3_N Location: 138331-138592 bp Feature: domain Description: AbiEi_3 Location: 138604-139060 bp Feature: domain Description: AbiEi_3 Location: 138604-139060 bp Feature: gene Location: 139417-142626 bp Ori: OLT01775.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139945-140434 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 139945-140434 bp Feature: domain Description: nitrilase Location: 141940-142537 bp Feature: domain Description: nitrilase Location: 141940-142 537 bp Feature: gene Location: 142973-143443 bp Feature: gene Location: 143440-143580 bp Ori: OLT01777.1 Feature: domain Description: SfsB Location: 143449-143521 bp Feature: domain Description: SfsB Location: 143449-14352 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: MKGZ01000217.1 Escherichia coli strain 69E6 69e6_contig_53_(1..23936)_consensus, whole genome shotgun sequence (23936 bp)
Overview 1 RT 1: 13015-19409 bp Neighborhood of RT #1 [13015, 19432] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 13015-13932 bp Ori: OLS95656.1 Feature: domain Description: PFLE_PFLC Location: 13051-13906 bp Feature: domain Description: PFLE_PFLC Location: 13 051-13 906 bp Feature: gene Location: 14069-14974 bp Feature: gene Location: 15460-15999 bp Ori: OLS95658.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15790-15868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15790-15868 bp Feature: gene Location: 16027-16548 bp Ori: OLS95659.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16033-16315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1603 3 -163 15 bp Feature: domain Description: GIIM Note: maturase Location: 16363-16543 bp Feature: domain Description: GIIM Note: maturase Location: 163 63 -16543 bp Feature: gene Location: 17131-18360 bp Ori: OLS95662.1 Feature: domain Description: YesM Location: 17611-18352 bp Feature: domain Description: YesM Location: 17611-183 52 bp Feature: gene Location: 18377-19432 bp Ori: OLS95660.1 Feature: domain Description: YesN Location: 18380-18770 bp Feature: domain Description: YesN Location: 183 80-18770 bp Feature: domain Description: YesN Location: 19112-19409 bp Feature: domain Description: YesN Location: 19112-19409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)