myRT

myRT report for GCA_001942465.1_ASM194246v1

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Seq: MKJY01000332.1 Actinomadura sp. CNU-125 NODE_39_length_54536_cov_99.2536_ID_8697, whole genome shotgun sequence (54536 bp)
Overview 1 RT 1: 1-2794 bp Neighborhood of RT #1 [1, 2856] RVT-CRISPR Cas_Cas1 CRISPR_Cas2 Feature: gene Location: 1-287 bp Feature: gene Location: 945-1547 bp Ori: OLT23339.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 996-1491 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 996-1 491 bp Feature: gene Location: 1549-2565 bp Ori: OLT23340.1 Feature: domain Description: Cas_Cas1 Location: 1579-2422 bp Feature: domain Description: Cas_Cas1 Location: 1 579-2422 bp Feature: gene Location: 2572-2856 bp Ori: OLT23341.1 Feature: domain Description: CRISPR_Cas2 Location: 2596-2794 bp Feature: domain Description: CRISPR_Cas2 Location: 2596-2794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), CRISPR_Cas2 (pfam09827)

Seq: MKJY01000238.1 Actinomadura sp. CNU-125 NODE_314_length_8356_cov_150.828_ID_14597, whole genome shotgun sequence (8356 bp)
Overview 1 RT 1: 5102-7517 bp Neighborhood of RT #1 [5102, 7561] RVT-GII DDE_3 COG3547 Feature: gene Location: 5102-6106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5318-5978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5318-5978 bp Feature: gene Location: 6184-6432 bp Ori: OLT26670.1 Feature: domain Description: DDE_3 Location: 6187-6319 bp Feature: domain Description: DDE_3 Location: 6187-6319 bp Feature: gene Location: 6485-7561 bp Ori: OLT26672.1 Feature: domain Description: COG3547 Location: 6542-7517 bp Feature: domain Description: COG3547 Location: 6542 -7517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358), COG3547 (Transposase )