myRT

myRT report for GCA_001945535.1_ASM194553v1

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Seq: MPJZ01000042.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_2_length_139683_cov_106.808_ID_3, whole genome shotgun sequence (139683 bp)
Overview 1 RT 1: 53271-62488 bp Neighborhood of RT #1 [53271, 64275] COG1661 Transposase_31 RVT-GII GIIM MBG_2 MBG_2 E_set_Chitobiase_C MBG_2 Flg_new Flg_new Flg_new Flg_new repeat_SSSPR51 repeat_SSSPR51 Flg_new Feature: gene Location: 53271-53690 bp Ori: OLU45863.1 Feature: domain Description: COG1661 Location: 53277-53679 bp Feature: domain Description: COG1 661 Location: 53277-53679 bp Feature: gene Location: 53803-54738 bp Ori: OLU45864.1 Feature: domain Description: Transposase_31 Location: 54037-54343 bp Feature: domain Description: Transposase_31 Location: 54037-54343 bp Feature: gene Location: 55018-56310 bp Ori: OLU45933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55219-55834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5521 9-55834 bp Feature: domain Description: GIIM Note: maturase Location: 55891-56110 bp Feature: domain Description: GIIM Note: maturase Location: 55891 -561 1 0 bp Feature: gene Location: 56869-58965 bp Ori: OLU45865.1 Feature: domain Description: MBG_2 Location: 56920-57133 bp Feature: domain Description: MBG_2 Location: 56920-571 33 bp Feature: domain Description: MBG_2 Location: 57433-57661 bp Feature: domain Description: MBG_2 Location: 57433-57661 bp Feature: domain Description: E_set_Chitobiase_C Location: 58357-58477 bp Feature: domain Description: E_set_Chitobiase_C Location: 58357-58477 bp Feature: domain Description: MBG_2 Location: 58531-58741 bp Feature: domain Description: MBG_2 Location: 58531 -58741 bp Feature: gene Location: 58972-64275 bp Ori: OLU45866.1 Feature: domain Description: Flg_new Location: 59773-59905 bp Feature: domain Description: Flg_new Location: 59773-59905 bp Feature: domain Description: Flg_new Location: 60361-60505 bp Feature: domain Description: Flg_new Location: 60361 -60505 bp Feature: domain Description: Flg_new Location: 61312-61432 bp Feature: domain Description: Flg_new Location: 61 31 2-61 432 bp Feature: domain Description: Flg_new Location: 61450-61636 bp Feature: domain Description: Flg_new Location: 61 450-61 636 bp Feature: domain Description: repeat_SSSPR51 Location: 61672-61714 bp Feature: domain Description: repeat_SSSPR51 Location: 61 672-61 71 4 bp Feature: domain Description: repeat_SSSPR51 Location: 61894-62008 bp Feature: domain Description: repeat_SSSPR51 Location: 61 894-62008 bp Feature: domain Description: Flg_new Location: 62293-62488 bp Feature: domain Description: Flg_new Location: 62293-62488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1661 (Predicted DNA-binding protein with PD1-like DNA-binding motif ), Transposase_31 (pfam04754), RVT-GII, GIIM (pfam08388), MBG_2 (pfam18676), E_set_Chitobiase_C (cd02847), Flg_new (pfam09479), repeat_SSSPR51 (TIGR04308)

Seq: MPJZ01000091.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_16_length_48117_cov_107.43_ID_31, whole genome shotgun sequence (48117 bp)
Overview 1 RT 1: 33500-38293 bp Neighborhood of RT #1 [33500, 38304] DUF4355 DUF2812 RVT-GII HTH_Tnp_1 RVT-GII GIIM RelE arc_metj arc_metj Feature: gene Location: 33500-34003 bp Ori: OLU43831.1 Feature: domain Description: DUF4355 Location: 33539-33866 bp Feature: domain Description: DUF4355 Location: 33539-33866 bp Feature: gene Location: 34094-35500 bp Ori: OLU43832.1 Feature: domain Description: DUF2812 Location: 34874-35201 bp Feature: domain Description: DUF2 812 Location: 34874-352 01 bp Feature: gene Location: 36017-36367 bp Ori: OLU43833.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36095-36359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36095-36359 bp Feature: gene Location: 36515-36814 bp Ori: OLU43834.1 Feature: domain Description: HTH_Tnp_1 Location: 36524-36755 bp Feature: domain Description: HTH_Tnp_1 Location: 3652 4-36755 bp Feature: gene Location: 36952-37686 bp Ori: OLU43835.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36991-37219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36991-372 19 bp Feature: domain Description: GIIM Note: maturase Location: 37276-37489 bp Feature: domain Description: GIIM Note: maturase Location: 372 76-37489 bp Feature: gene Location: 37803-38075 bp Ori: OLU43836.1 Feature: domain Description: RelE Location: 37806-38073 bp Feature: domain Description: RelE Location: 37806-38073 bp Feature: gene Location: 38077-38304 bp Ori: OLU43837.1 Feature: domain Description: arc_metj Location: 38095-38209 bp Feature: domain Description: arc_metj Location: 38095-382 09 bp Feature: domain Description: arc_metj Location: 38227-38293 bp Feature: domain Description: arc_metj Location: 382 2 7-382 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4355 (pfam14265), DUF2812 (pfam11193), RVT-GII, HTH_Tnp_1 (pfam01527), GIIM (pfam08388), RelE (pfam06296), arc_metj (LOAD_arc_metj)

Seq: MPJZ01000089.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_10_length_68686_cov_107.053_ID_19, whole genome shotgun sequence (68686 bp)
Overview 1 RT 1: 110-3522 bp Neighborhood of RT #1 [110, 3593] RVT-GII GIIM Hydrolase_3 Feature: gene Location: 110-310 bp Feature: gene Location: 508-1857 bp Ori: OLU43933.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 54 bp Feature: domain Description: GIIM Note: maturase Location: 1411-1624 bp Feature: domain Description: GIIM Note: maturase Location: 1411-1624 bp Feature: gene Location: 2481-2690 bp Feature: gene Location: 2691-3593 bp Ori: OLU43935.1 Feature: domain Description: Hydrolase_3 Location: 2709-3522 bp Feature: domain Description: Hydrolase_3 Location: 2709-3 522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Hydrolase_3 (pfam08282)

Seq: MPJZ01000100.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_78_length_1921_cov_216.593_ID_155, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 544-1660 bp Neighborhood of RT #1 [544, 1893] RVT-GII GIIM Feature: gene Location: 544-1893 bp Ori: OLU43537.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1447-1660 bp Feature: domain Description: GIIM Note: maturase Location: 14 4 7-1660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPJZ01000074.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_45_length_16823_cov_115.061_ID_89, whole genome shotgun sequence (16823 bp)
Overview 1 RT 1: 11586-16013 bp Neighborhood of RT #1 [11586, 16033] MngR MscL RVT-GII GIIM PTS_IIA Feature: gene Location: 11586-12299 bp Ori: OLU44224.1 Feature: domain Description: MngR Location: 11592-12282 bp Feature: domain Description: MngR Location: 115 92-12282 bp Feature: gene Location: 12811-13230 bp Ori: OLU44225.1 Feature: domain Description: MscL Location: 12814-13186 bp Feature: domain Description: MscL Location: 12814-13186 bp Feature: gene Location: 13766-15115 bp Ori: OLU44226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14000-14612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14000-14612 bp Feature: domain Description: GIIM Note: maturase Location: 14669-14882 bp Feature: domain Description: GIIM Note: maturase Location: 14669-14882 bp Feature: gene Location: 15716-16033 bp Ori: OLU44227.1 Feature: domain Description: PTS_IIA Location: 15737-16013 bp Feature: domain Description: PTS_IIA Location: 15 737-16013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MngR (COG2188), MscL (pfam01741), RVT-GII, GIIM (pfam08388), PTS_IIA (pfam02255)

Seq: MPJZ01000006.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_79_length_1911_cov_249.802_ID_157, whole genome shotgun sequence (1911 bp)
Overview 1 RT 1: 535-1651 bp Neighborhood of RT #1 [535, 1884] RVT-GII GIIM Feature: gene Location: 535-1884 bp Ori: OLU47271.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 6 -1381 bp Feature: domain Description: GIIM Note: maturase Location: 1438-1651 bp Feature: domain Description: GIIM Note: maturase Location: 1438-16 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPJZ01000056.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_5_length_95956_cov_110.287_ID_9, whole genome shotgun sequence (95956 bp)
Overview 1 RT 1: 46878-57752 bp Neighborhood of RT #1 [46878, 57997] FIVAR FIVAR DUF1080 Cadherin-like Glyco_32 Big_2 DUF1080 FIVAR FIVAR FIVAR FIVAR CtkA RVT-GII LbH_MAT_GAT GH32_Inu-like Glyco_hydro_32C FIVAR Feature: gene Location: 46878-52538 bp Ori: OLU44817.1 Feature: domain Description: FIVAR Location: 47514-47646 bp Feature: domain Description: FIVAR Location: 47 514-47 646 bp Feature: domain Description: FIVAR Location: 47682-47868 bp Feature: domain Description: FIVAR Location: 47 682-47 868 bp Feature: domain Description: DUF1080 Location: 48465-48975 bp Feature: domain Description: DUF1080 Location: 48465-4897 5 bp Feature: domain Description: Cadherin-like Location: 49062-49281 bp Feature: domain Description: Cadherin-like Location: 49062-49281 bp Feature: domain Description: Glyco_32 Location: 49332-50634 bp Feature: domain Description: Glyco_32 Location: 49332-50634 bp Feature: domain Description: Big_2 Location: 50790-50985 bp Feature: domain Description: Big_2 Location: 507 90-50985 bp Feature: domain Description: DUF1080 Location: 51057-51504 bp Feature: domain Description: DUF1080 Location: 51057 -51504 bp Feature: domain Description: FIVAR Location: 51540-51726 bp Feature: domain Description: FIVAR Location: 51540-517 26 bp Feature: domain Description: FIVAR Location: 51759-51945 bp Feature: domain Description: FIVAR Location: 517 59-51945 bp Feature: domain Description: FIVAR Location: 51975-52161 bp Feature: domain Description: FIVAR Location: 5197 5-52161 bp Feature: domain Description: FIVAR Location: 52194-52377 bp Feature: domain Description: FIVAR Location: 52194-5237 7 bp Feature: gene Location: 52872-53405 bp Ori: OLU44818.1 Feature: domain Description: CtkA Location: 52887-53307 bp Feature: domain Description: CtkA Location: 52887 -53307 bp Feature: gene Location: 53402-53812 bp Ori: OLU44819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53414-53537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53414-53537 bp Feature: gene Location: 54522-55142 bp Ori: OLU44820.1 Feature: domain Description: LbH_MAT_GAT Location: 54567-55071 bp Feature: domain Description: LbH_MAT_GAT Location: 54567 -5507 1 bp Feature: gene Location: 55379-57997 bp Ori: OLU44821.1 Feature: domain Description: GH32_Inu-like Location: 55919-56993 bp Feature: domain Description: GH32_Inu-like Location: 55919-56993 bp Feature: domain Description: Glyco_hydro_32C Location: 57089-57500 bp Feature: domain Description: Glyco_hydro_32C Location: 57 089-57 500 bp Feature: domain Description: FIVAR Location: 57557-57752 bp Feature: domain Description: FIVAR Location: 57 557 -57 7 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FIVAR (pfam07554), DUF1080 (pfam06439), Cadherin-like (pfam12733), Glyco_32 (smart00640), Big_2 (pfam02368), CtkA (cd17792), RVT-GII, LbH_MAT_GAT (cd03357), GH32_Inu-like (cd18622), Glyco_hydro_32C (pfam08244)

Seq: MPJZ01000058.1 Faecalibaculum rodentium strain NYU-BL-K8 NODE_76_length_1962_cov_467.627_ID_151, whole genome shotgun sequence (1962 bp)
Overview 1 RT 1: 538-1621 bp Neighborhood of RT #1 [538, 1851] RVT-GII GIIM Feature: gene Location: 538-1851 bp Ori: OLU44720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1411-1621 bp Feature: domain Description: GIIM Note: maturase Location: 1411-1621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)