myRT

myRT report for GCA_001953375.1_ASM195337v1

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Seq: MOLM01000042.1 Vibrio cholerae strain DL4215 AB_SE_12_CTTGTA_L008_R2_001_(paired)_contig_42, whole genome shotgun sequence (3598 bp)
Overview 1 RT 1: 82-2977 bp Neighborhood of RT #1 [82, 2977] RVT-GII GIIM Feature: gene Location: 82-1443 bp Ori: OLZ22678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 -1 054 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1342 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 38-1 342 bp Feature: gene Location: 2075-2977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOLM01000028.1 Vibrio cholerae strain DL4215 AB_SE_12_CTTGTA_L008_R2_001_(paired)_contig_28, whole genome shotgun sequence (54544 bp)
Overview 1 RT 1: 49798-54431 bp Neighborhood of RT #1 [49798, 54431] PRK07578 SLATT_5 RVT-UG17 Feature: gene Location: 49798-50403 bp Ori: OLZ22924.1 Feature: domain Description: PRK07578 Location: 49807-50395 bp Feature: domain Description: PRK07578 Location: 49807-50395 bp Feature: gene Location: 50829-51482 bp Ori: OLZ22925.1 Feature: domain Description: SLATT_5 Location: 50838-51426 bp Feature: domain Description: SLATT_5 Location: 50838-5142 6 bp Feature: gene Location: 51484-52815 bp Ori: OLZ22926.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 51712-52315 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 51712 -52 315 bp Feature: gene Location: 53688-54431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07578 (short chain dehydrogenase; Provisional), SLATT_5 (pfam18160), RVT-UG17

Seq: MOLM01000017.1 Vibrio cholerae strain DL4215 AB_SE_12_CTTGTA_L008_R2_001_(paired)_contig_17, whole genome shotgun sequence (752156 bp)
Overview 1 RT 1: 346304-353841 bp Neighborhood of RT #1 [346304, 353879] PRK07726 HDAC_classIV RVT-Retrons AAA_21 RloC Feature: gene Location: 346304-348247 bp Ori: OLZ24022.1 Feature: domain Description: PRK07726 Location: 346313-348227 bp Feature: domain Description: PRK07726 Location: 3 463 13 -3 48227 bp Feature: gene Location: 348268-349188 bp Ori: OLZ24023.1 Feature: domain Description: HDAC_classIV Location: 348325-349159 bp Feature: domain Description: HDAC_classIV Location: 3 483 25-3 49159 bp Feature: gene Location: 349535-350707 bp Ori: OLZ24024.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 349700-350324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 49700-3 503 24 bp Feature: gene Location: 350843-353077 bp Ori: OLZ24025.1 Feature: domain Description: AAA_21 Location: 350918-351848 bp Feature: domain Description: AAA_21 Location: 3 50918-3 51848 bp Feature: gene Location: 353331-353879 bp Ori: OLZ24026.1 Feature: domain Description: RloC Location: 353334-353841 bp Feature: domain Description: RloC Location: 3 53 3 3 4-3 53 841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), HDAC_classIV (cd09993), RVT-Retrons, AAA_21 (pfam13304), RloC (COG4694)