myRT

myRT report for GCA_001953715.1_ASM195371v1

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Seq: LIVR01000001.1 Enterococcus faecium strain ISMMS_VRE_6 unitig_6, whole genome shotgun sequence (1069964 bp)
Overview 1 RT 1: 15635-22466 bp 2 RT 2: 525815-531049 bp 3 RT 3: 534110-544053 bp 4 RT 4: 890668-895269 bp 5 RT 5: 953111-958293 bp 6 RT 6: 961803-973750 bp Neighborhood of RT #1 [15635, 22474] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #2 [525815, 531876] Lysozyme_like Spr RVT-GII Neighborhood of RT #3 [534110, 544121] TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc DUF961 Neighborhood of RT #4 [890668, 895277] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #5 [953111, 959120] Lysozyme_like Spr RVT-GII Neighborhood of RT #6 [961803, 973758] ArdA RVT-GII HNHc DUF3789 Zeta_toxin RVT-GII HNHc RelB_DinJ Feature: gene Location: 15635-16516 bp Ori: OLZ35302.1 Feature: domain Description: CcmA Location: 15638-16508 bp Feature: domain Description: CcmA Location: 1 5638-1 6508 bp Feature: gene Location: 16770-17369 bp Ori: OLZ35303.1 Feature: domain Description: AcrR Location: 16788-17274 bp Feature: domain Description: AcrR Location: 1 6788-1 7274 bp Feature: gene Location: 17856-19244 bp Ori: OLZ35304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18177-18792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 77-1 8792 bp Feature: domain Description: GIIM Note: maturase Location: 18849-19065 bp Feature: domain Description: GIIM Note: maturase Location: 1 8849-1 9065 bp Feature: gene Location: 19337-20638 bp Ori: OLZ35305.1 Feature: domain Description: CE4_DAC_u3_5s Location: 20006-20396 bp Feature: domain Description: CE4_DAC_u3_5s Location: 20006-20396 bp Feature: gene Location: 21218-22474 bp Ori: OLZ35306.1 Feature: domain Description: PRK13354 Location: 21221-22466 bp Feature: domain Description: PRK1 3354 Location: 21 221 -22466 bp Feature: gene Location: 525815-526816 bp Ori: OLZ35732.1 Feature: domain Description: Lysozyme_like Location: 525959-526418 bp Feature: domain Description: Lysozyme_like Location: 525959-52641 8 bp Feature: domain Description: Spr Location: 526445-526799 bp Feature: domain Description: Spr Location: 526445-526799 bp Feature: gene Location: 526813-528996 bp Feature: gene Location: 530050-531876 bp Ori: OLZ35734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530350-531049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 530350-531 049 bp Feature: gene Location: 534110-534502 bp Ori: OLZ35735.1 Feature: domain Description: TcpE Location: 534128-534428 bp Feature: domain Description: TcpE Location: 5341 28-534428 bp Feature: gene Location: 534589-535086 bp Ori: OLZ35736.1 Feature: domain Description: ArdA Location: 534607-535072 bp Feature: domain Description: ArdA Location: 534607-535072 bp Feature: gene Location: 535531-537441 bp Ori: OLZ35737.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535864-536602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535864-536602 bp Feature: domain Description: HNHc Note: nucleases Location: 537157-537322 bp Feature: domain Description: HNHc Note: nucleases Location: 5371 57-537322 bp Feature: gene Location: 538225-539430 bp Ori: OLZ35738.1 Feature: domain Description: HTH_XRE Location: 538270-538414 bp Feature: domain Description: HTH_XRE Location: 538270-53841 4 bp Feature: domain Description: Rol_Rep_N Location: 538441-538708 bp Feature: domain Description: Rol_Rep_N Location: 538441 -538708 bp Feature: domain Description: Rep_trans Location: 538732-539341 bp Feature: domain Description: Rep_trans Location: 538732-539341 bp Feature: gene Location: 539609-539893 bp Feature: gene Location: 539987-541846 bp Ori: OLZ35740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540296-541037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540296-541 037 bp Feature: domain Description: HNHc Note: nucleases Location: 541592-541730 bp Feature: domain Description: HNHc Note: nucleases Location: 541 592-541 730 bp Feature: gene Location: 541965-542195 bp Feature: gene Location: 543735-544121 bp Ori: OLZ35742.1 Feature: domain Description: DUF961 Location: 543753-544053 bp Feature: domain Description: DUF961 Location: 543753-544053 bp Feature: gene Location: 890668-890913 bp Ori: OLZ36055.1 Feature: domain Description: HTH_XRE Location: 890719-890905 bp Feature: domain Description: HTH_XRE Location: 89071 9-890905 bp Feature: gene Location: 891289-891768 bp Ori: OLZ36056.1 Feature: domain Description: DUF3841 Location: 891298-891673 bp Feature: domain Description: DUF3841 Location: 891 298-891 673 bp Feature: gene Location: 891946-893442 bp Ori: OLZ36241.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 892354-892810 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 892354-89281 0 bp Feature: gene Location: 893588-893902 bp Ori: OLZ36057.1 Feature: domain Description: AlbA_2 Location: 893627-893798 bp Feature: domain Description: AlbA_2 Location: 893627-893798 bp Feature: gene Location: 894018-895277 bp Ori: OLZ36058.1 Feature: domain Description: PRK09290 Location: 894024-895269 bp Feature: domain Description: PRK09290 Location: 894024-895269 bp Feature: gene Location: 953111-954115 bp Ori: OLZ36109.1 Feature: domain Description: Lysozyme_like Location: 953258-953720 bp Feature: domain Description: Lysozyme_like Location: 953258-953720 bp Feature: domain Description: Spr Location: 953747-954101 bp Feature: domain Description: Spr Location: 953747-9541 01 bp Feature: gene Location: 954112-956235 bp Feature: gene Location: 957294-959120 bp Ori: OLZ36111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957594-958293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957594-958293 bp Feature: gene Location: 961803-962306 bp Ori: OLZ36113.1 Feature: domain Description: ArdA Location: 961821-962292 bp Feature: domain Description: ArdA Location: 961 821 -962292 bp Feature: gene Location: 962319-962543 bp Feature: gene Location: 962647-964557 bp Ori: OLZ36115.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962980-963718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962980-96371 8 bp Feature: domain Description: HNHc Note: nucleases Location: 964273-964438 bp Feature: domain Description: HNHc Note: nucleases Location: 964273-964438 bp Feature: gene Location: 965303-965422 bp Ori: OLZ36116.1 Feature: domain Description: DUF3789 Location: 965312-965405 bp Feature: domain Description: DUF3789 Location: 96531 2-965405 bp Feature: gene Location: 966881-967171 bp Feature: gene Location: 968536-969210 bp Ori: OLZ36120.1 Feature: domain Description: Zeta_toxin Location: 968635-969118 bp Feature: domain Description: Zeta_toxin Location: 968635-9691 1 8 bp Feature: gene Location: 969288-969527 bp Feature: gene Location: 969621-971480 bp Ori: OLZ36122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969930-970671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969930-970671 bp Feature: domain Description: HNHc Note: nucleases Location: 971226-971364 bp Feature: domain Description: HNHc Note: nucleases Location: 971 226-971 364 bp Feature: gene Location: 971599-971829 bp Feature: gene Location: 973423-973758 bp Ori: OLZ36124.1 Feature: domain Description: RelB_DinJ Location: 973627-973750 bp Feature: domain Description: RelB_DinJ Location: 973627-973750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Lysozyme_like (pfam13702), Spr (COG0791), TcpE (pfam12648), ArdA (pfam07275)
HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF961 (pfam06125), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), DUF3789 (pfam12664)
Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384)

Seq: CM007640.1 Enterococcus faecium strain ISMMS_VRE_6 plasmid pISMMS_VRE6_2, complete sequence, whole genome shotgun sequence (64030 bp)
Overview 1 RT 1: 30584-37110 bp Neighborhood of RT #1 [30584, 37115] DUF5592 Rve RVT-AbiP2 Tra8 PinE Feature: gene Location: 30584-30898 bp Ori: OLZ33485.1 Feature: domain Description: DUF5592 Location: 30611-30857 bp Feature: domain Description: DUF5592 Location: 30611-30857 bp Feature: gene Location: 30984-31664 bp Ori: OLZ33452.1 Feature: domain Description: Rve Location: 30987-31635 bp Feature: domain Description: Rve Location: 30987-31635 bp Feature: gene Location: 33503-34891 bp Ori: OLZ33486.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 33764-34229 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 33764-342 2 9 bp Feature: gene Location: 34956-35909 bp Ori: OLZ33453.1 Feature: domain Description: Tra8 Location: 34959-35886 bp Feature: domain Description: Tra8 Location: 34959-35886 bp Feature: gene Location: 36552-37115 bp Ori: OLZ33454.1 Feature: domain Description: PinE Location: 36564-37110 bp Feature: domain Description: PinE Location: 36564-37110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5592, Rve (COG3316), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)