myRT

myRT report for GCA_001953855.1_ASM195385v1

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Seq: MQUP01000003.1 Amycolatopsis keratiniphila subsp. nogabecina strain FH 1893 contig_3, whole genome shotgun sequence (43990 bp)
Overview 1 RT 1: 39987-43475 bp Neighborhood of RT #1 [39987, 43928] betaine_BetI DDE_5 RVT-GII Feature: gene Location: 39987-40607 bp Ori: OLZ60720.1 Feature: domain Description: betaine_BetI Location: 40038-40527 bp Feature: domain Description: betaine_BetI Location: 40038-40527 bp Feature: gene Location: 41265-42388 bp Feature: domain Description: DDE_5 Location: 41319-42006 bp Feature: domain Description: DDE_5 Location: 41 31 9-42006 bp Feature: gene Location: 42653-43928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42869-43475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42869-43475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT betaine_BetI (TIGR03384), DDE_5 (pfam13546), RVT-GII

Seq: MQUP01000013.1 Amycolatopsis keratiniphila subsp. nogabecina strain FH 1893 contig_13, whole genome shotgun sequence (574886 bp)
Overview 1 RT 1: 60103-65590 bp Neighborhood of RT #1 [60103, 65658] TNT YjbI RVT-Retrons VOC_like Hemerythrin Feature: gene Location: 60103-62706 bp Ori: OLZ55887.1 Feature: domain Description: TNT Location: 62422-62674 bp Feature: domain Description: TNT Location: 62 42 2 -62 674 bp Feature: gene Location: 62783-63370 bp Ori: OLZ55888.1 Feature: domain Description: YjbI Location: 62846-63308 bp Feature: domain Description: YjbI Location: 62 846-63308 bp Feature: gene Location: 63393-64418 bp Ori: OLZ55889.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63552-64188 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63552 -64188 bp Feature: gene Location: 64600-65082 bp Ori: OLZ55890.1 Feature: domain Description: VOC_like Location: 64633-64975 bp Feature: domain Description: VOC_like Location: 64633-64975 bp Feature: gene Location: 65149-65658 bp Ori: OLZ55891.1 Feature: domain Description: Hemerythrin Location: 65203-65590 bp Feature: domain Description: Hemerythrin Location: 652 03-65590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TNT (pfam14021), YjbI (COG2346), RVT-Retrons, VOC_like (cd16355), Hemerythrin (TIGR00058)

Seq: MQUP01000004.1 Amycolatopsis keratiniphila subsp. nogabecina strain FH 1893 contig_4, whole genome shotgun sequence (1087939 bp)
Overview 1 RT 1: 73345-76574 bp Neighborhood of RT #1 [73345, 76574] QueC RVT-CRISPR-like YfmG Feature: gene Location: 73345-73827 bp Feature: gene Location: 73827-74534 bp Ori: OLZ60431.1 Feature: domain Description: QueC Location: 73866-74523 bp Feature: domain Description: QueC Location: 73 866-74523 bp Feature: gene Location: 74749-75528 bp Ori: OLZ59555.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 74953-75490 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 74953 -75490 bp Feature: gene Location: 75532-76089 bp Ori: OLZ59556.1 Feature: domain Description: YfmG Location: 75676-76084 bp Feature: domain Description: YfmG Location: 75676-76084 bp Feature: gene Location: 76086-76574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueC (pfam06508), RVT-CRISPR, YfmG (COG1262)

Seq: MQUP01000053.1 Amycolatopsis keratiniphila subsp. nogabecina strain FH 1893 contig_53, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 729-2001 bp Neighborhood of RT #1 [729, 2492] RVT_N RVT-GII GIIM Feature: gene Location: 729-2492 bp Ori: OLZ43299.1 Feature: domain Description: RVT_N Location: 759-993 bp Feature: domain Description: RVT_N Location: 759-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1713 bp Feature: domain Description: GIIM Note: maturase Location: 1767-2001 bp Feature: domain Description: GIIM Note: maturase Location: 1767-2001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)