myRT

myRT report for GCA_001955865.1_ASM195586v1

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Seq: MRTT01000015.1 Paenibacillus glucanolyticus strain FSL R5-0817 NODE_15_length_153302_cov_1.49468_ID_6799, whole genome shotgun sequence (153302 bp)
Overview 1 RT 1: 18691-29551 bp Neighborhood of RT #1 [18691, 29568] HmoA NAGPA NAGPA FlaA Cohesin KOG1378 Big_2 Big_2 SLH SLH SLH RVT-GII GIIM PGA_cap Lrp Feature: gene Location: 18691-19017 bp Ori: OMF74304.1 Feature: domain Description: HmoA Location: 18754-19003 bp Feature: domain Description: HmoA Location: 1 8754-1 9003 bp Feature: gene Location: 19185-25259 bp Ori: OMF74305.1 Feature: domain Description: NAGPA Location: 19446-19725 bp Feature: domain Description: NAGPA Location: 1 9446-1 9725 bp Feature: domain Description: NAGPA Location: 19902-20352 bp Feature: domain Description: NAGPA Location: 1 9902-20352 bp Feature: domain Description: FlaA Location: 21051-21270 bp Feature: domain Description: FlaA Location: 21 051 -21 270 bp Feature: domain Description: Cohesin Location: 21780-22083 bp Feature: domain Description: Cohesin Location: 21 780-22083 bp Feature: domain Description: KOG1378 Location: 22449-23346 bp Feature: domain Description: KOG1 378 Location: 22449-23346 bp Feature: domain Description: Big_2 Location: 23529-23745 bp Feature: domain Description: Big_2 Location: 23529-23745 bp Feature: domain Description: Big_2 Location: 23826-24003 bp Feature: domain Description: Big_2 Location: 23826-24003 bp Feature: domain Description: SLH Location: 24717-24846 bp Feature: domain Description: SLH Location: 2471 7-24846 bp Feature: domain Description: SLH Location: 24894-25023 bp Feature: domain Description: SLH Location: 24894-25023 bp Feature: domain Description: SLH Location: 25095-25218 bp Feature: domain Description: SLH Location: 25095-2521 8 bp Feature: gene Location: 25763-27154 bp Ori: OMF74306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26105-26723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 05-26723 bp Feature: domain Description: GIIM Note: maturase Location: 26774-26984 bp Feature: domain Description: GIIM Note: maturase Location: 26774-26984 bp Feature: gene Location: 27622-28719 bp Ori: OMF74307.1 Feature: domain Description: PGA_cap Location: 27793-28504 bp Feature: domain Description: PGA_cap Location: 27793-28504 bp Feature: gene Location: 29086-29568 bp Ori: OMF74308.1 Feature: domain Description: Lrp Location: 29128-29551 bp Feature: domain Description: Lrp Location: 291 28-29551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HmoA (COG2329), NAGPA (pfam09992), FlaA (pfam04620), Cohesin (pfam00963), KOG1378 (KOG1378, Purple acid phosphatase ), Big_2 (pfam02368), SLH (pfam00395), RVT-GII, GIIM (pfam08388), PGA_cap (smart00854)
Lrp (COG1522)

Seq: MRTT01000086.1 Paenibacillus glucanolyticus strain FSL R5-0817 NODE_86_length_2608_cov_3.26983_ID_6939, whole genome shotgun sequence (2608 bp)
Overview 1 RT 1: 707-2378 bp Neighborhood of RT #1 [707, 2512] RVT-GII HNHc Feature: gene Location: 707-2512 bp Ori: OMF63073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1697 bp Feature: domain Description: HNHc Note: nucleases Location: 2240-2378 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 40-2 378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: MRTT01000085.1 Paenibacillus glucanolyticus strain FSL R5-0817 NODE_85_length_2628_cov_3.57256_ID_6937, whole genome shotgun sequence (2628 bp)
Overview 1 RT 1: 710-1700 bp Neighborhood of RT #1 [710, 2503] RVT-GII Feature: gene Location: 710-2503 bp Ori: OMF63074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004-1700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MRTT01000041.1 Paenibacillus glucanolyticus strain FSL R5-0817 NODE_41_length_38959_cov_0.246783_ID_6863, whole genome shotgun sequence (38959 bp)
Overview 1 RT 1: 20102-29325 bp Neighborhood of RT #1 [20102, 29615] SLH SLH SLH LysM RVT-GII GIIM HNHc DEXHc_Snf DEXHc_Snf KOG1000 Feature: gene Location: 20102-21316 bp Ori: OMF66836.1 Feature: domain Description: SLH Location: 20186-20315 bp Feature: domain Description: SLH Location: 20186-20315 bp Feature: domain Description: SLH Location: 20372-20495 bp Feature: domain Description: SLH Location: 20372-204 95 bp Feature: domain Description: SLH Location: 20621-20717 bp Feature: domain Description: SLH Location: 20621-20717 bp Feature: gene Location: 21971-22354 bp Ori: OMF66837.1 Feature: domain Description: LysM Location: 22169-22274 bp Feature: domain Description: LysM Location: 22169-22274 bp Feature: gene Location: 23139-25019 bp Ori: OMF66838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23436-24141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 36-24 14 1 bp Feature: domain Description: GIIM Note: maturase Location: 24315-24450 bp Feature: domain Description: GIIM Note: maturase Location: 24 315-24 4 50 bp Feature: domain Description: HNHc Note: nucleases Location: 24771-24930 bp Feature: domain Description: HNHc Note: nucleases Location: 24 771-24 930 bp Feature: gene Location: 25594-26160 bp Feature: gene Location: 26220-29615 bp Ori: OMF66840.1 Feature: domain Description: DEXHc_Snf Location: 27252-27612 bp Feature: domain Description: DEXHc_Snf Location: 27252-27612 bp Feature: domain Description: DEXHc_Snf Location: 28038-28170 bp Feature: domain Description: DEXHc_Snf Location: 28038-28170 bp Feature: domain Description: KOG1000 Location: 28785-29325 bp Feature: domain Description: KOG1000 Location: 28785-29325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), LysM (smart00257), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: MRTT01000095.1 Paenibacillus glucanolyticus strain FSL R5-0817 NODE_95_length_1012_cov_0.0963855_ID_6957, whole genome shotgun sequence (1012 bp)
Overview 1 RT 1: 1-715 bp Neighborhood of RT #1 [1, 985] RVT-UG17 Feature: gene Location: 1-985 bp Ori: OMF62206.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 124-715 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 124-715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17