myRT

myRT report for GCA_001957135.1_ASM195713v1

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Seq: MPHK01000002.1 Shewanella sp. UCD-KL21 scaffold_1, whole genome shotgun sequence (389525 bp)
Overview 1 RT 1: 3-3360 bp Neighborhood of RT #1 [3, 3360] RVT_N RVT-GII GIIM INT_C_like_1 Feature: gene Location: 3-1625 bp Feature: domain Description: RVT_N Location: 201-444 bp Feature: domain Description: RVT_N Location: 201 -444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1 1 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 1176-1401 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 76-1 401 bp Feature: gene Location: 1790-3175 bp Feature: domain Description: INT_C_like_1 Location: 2597-3119 bp Feature: domain Description: INT_C_like_1 Location: 2597-31 1 9 bp Feature: gene Location: 3226-3360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), INT_C_like_1 (cd01184)

Seq: MPHK01000020.1 Shewanella sp. UCD-KL21 scaffold_19, whole genome shotgun sequence (72344 bp)
Overview 1 RT 1: 68945-72222 bp Neighborhood of RT #1 [68945, 72341] RVT_N RVT-GII PRK09907 RVT-GII GIIM Feature: gene Location: 68945-69187 bp Feature: gene Location: 69318-69596 bp Feature: gene Location: 69662-70486 bp Feature: domain Description: RVT_N Location: 69752-69995 bp Feature: domain Description: RVT_N Location: 69752 -69995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70040-70469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70040-70469 bp Feature: gene Location: 70716-71063 bp Feature: domain Description: PRK09907 Location: 70728-71025 bp Feature: domain Description: PRK09907 Location: 7072 8-7102 5 bp Feature: gene Location: 71088-71351 bp Feature: gene Location: 71814-72341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71826-71937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7182 6-71937 bp Feature: domain Description: GIIM Note: maturase Location: 71994-72222 bp Feature: domain Description: GIIM Note: maturase Location: 71994-72 2 2 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK09907 (endoribonuclease MazF), GIIM (pfam08388)

Seq: MPHK01000025.1 Shewanella sp. UCD-KL21 scaffold_24, whole genome shotgun sequence (55617 bp)
Overview 1 RT 1: 2-1128 bp Neighborhood of RT #1 [2, 1128] RVT-GII GIIM Feature: gene Location: 2-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-287 bp Feature: domain Description: GIIM Note: maturase Location: 347-572 bp Feature: domain Description: GIIM Note: maturase Location: 3 47-572 bp Feature: gene Location: 809-943 bp Feature: gene Location: 976-1128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPHK01000027.1 Shewanella sp. UCD-KL21 scaffold_26, whole genome shotgun sequence (49101 bp)
Overview 1 RT 1: 45745-49098 bp Neighborhood of RT #1 [45745, 49098] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 45745-46140 bp Feature: domain Description: InsE Location: 45763-46072 bp Feature: domain Description: InsE Location: 4 5763-4 6072 bp Feature: gene Location: 46242-46532 bp Feature: domain Description: PHA02517 Location: 46281-46512 bp Feature: domain Description: PHA02517 Location: 4 6281-4 6512 bp Feature: gene Location: 47173-48696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47446-48178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 74 4 6-4 8178 bp Feature: domain Description: GIIM Note: maturase Location: 48250-48451 bp Feature: domain Description: GIIM Note: maturase Location: 4 8250-4 84 51 bp Feature: gene Location: 48889-49098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MPHK01000004.1 Shewanella sp. UCD-KL21 scaffold_3, whole genome shotgun sequence (258247 bp)
Overview 1 RT 1: 238353-244165 bp Neighborhood of RT #1 [238353, 244182] TniQ RVT-Retrons HsdM Feature: gene Location: 238353-239588 bp Feature: domain Description: TniQ Location: 238389-238851 bp Feature: domain Description: TniQ Location: 238389-23885 1 bp Feature: gene Location: 239825-241009 bp Feature: gene Location: 241274-242413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241496-242138 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241496-242138 bp Feature: gene Location: 242424-242705 bp Feature: gene Location: 242704-244182 bp Feature: domain Description: HsdM Location: 242779-244165 bp Feature: domain Description: HsdM Location: 242779-244165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), RVT-Retrons, HsdM (COG0286)

Seq: MPHK01000048.1 Shewanella sp. UCD-KL21 scaffold_48, whole genome shotgun sequence (2021 bp)
Overview 1 RT 1: 3-2017 bp Neighborhood of RT #1 [3, 2019] RVT_N RVT-GII GIIM Nterm_IS4 Feature: gene Location: 3-1475 bp Feature: domain Description: RVT_N Location: 51-294 bp Feature: domain Description: RVT_N Location: 51-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-96 6 bp Feature: domain Description: GIIM Note: maturase Location: 1023-1251 bp Feature: domain Description: GIIM Note: maturase Location: 1023-1251 bp Feature: gene Location: 1786-2019 bp Feature: domain Description: Nterm_IS4 Location: 1894-2017 bp Feature: domain Description: Nterm_IS4 Location: 1894-2017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Nterm_IS4 (pfam13006)

Seq: MPHK01000049.1 Shewanella sp. UCD-KL21 scaffold_49, whole genome shotgun sequence (1720 bp)
Overview 1 RT 1: 3-1438 bp Neighborhood of RT #1 [3, 1632] RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: gene Location: 286-1632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-1186 bp Feature: domain Description: GIIM Note: maturase Location: 1234-1438 bp Feature: domain Description: GIIM Note: maturase Location: 1234-1438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MPHK01000051.1 Shewanella sp. UCD-KL21 scaffold_51, whole genome shotgun sequence (1576 bp)
Overview 1 RT 1: 3-1121 bp Neighborhood of RT #1 [3, 1121] RVT-Retrons Feature: gene Location: 3-608 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-354 bp Feature: gene Location: 734-976 bp Feature: gene Location: 987-1121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MPHK01000070.1 Shewanella sp. UCD-KL21 scaffold_70, whole genome shotgun sequence (805 bp)
Overview 1 RT 1: 3-804 bp Neighborhood of RT #1 [3, 803] RVT_N RVT-GII Feature: gene Location: 3-803 bp Feature: domain Description: RVT_N Location: 201-444 bp Feature: domain Description: RVT_N Location: 201-444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489 -804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: MPHK01000077.1 Shewanella sp. UCD-KL21 scaffold_77, whole genome shotgun sequence (705 bp)
Overview 1 RT 1: 2-704 bp Neighborhood of RT #1 [2, 703] RVT_N RVT-GII Feature: gene Location: 2-703 bp Feature: domain Description: RVT_N Location: 50-293 bp Feature: domain Description: RVT_N Location: 50-293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338-704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII