myRT

myRT report for GCA_001957165.1_ASM195716v1

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Seq: MPHM01000037.1 Vibrio ostreicida strain UCD-KL16 scaffold_37, whole genome shotgun sequence (1215 bp)
Overview 1 RT 1: 89-785 bp Neighborhood of RT #1 [89, 1039] RVT-Retrons Feature: gene Location: 89-1039 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251-785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251 -785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MPHM01000006.1 Vibrio ostreicida strain UCD-KL16 scaffold_5, whole genome shotgun sequence (253705 bp)
Overview 1 RT 1: 185362-189274 bp Neighborhood of RT #1 [185362, 189274] RVT-UG4 DUF4157 Feature: gene Location: 185362-185865 bp Feature: gene Location: 186490-187155 bp Feature: gene Location: 187275-188348 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 187614-188079 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 187614-188079 bp Feature: gene Location: 188384-188839 bp Feature: domain Description: DUF4157 Location: 188510-188708 bp Feature: domain Description: DUF4157 Location: 188510-188708 bp Feature: gene Location: 189074-189274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, DUF4157 (pfam13699)

Seq: MPHM01000007.1 Vibrio ostreicida strain UCD-KL16 scaffold_6, whole genome shotgun sequence (223892 bp)
Overview 1 RT 1: 83095-92621 bp Neighborhood of RT #1 [83095, 92746] groES groEL RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII GIIM HNHc DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 83095-83388 bp Feature: domain Description: groES Location: 83098-83383 bp Feature: domain Description: groES Location: 83 098-83 3 83 bp Feature: gene Location: 83458-85104 bp Feature: domain Description: groEL Location: 83464-85084 bp Feature: domain Description: groEL Location: 83 464-85084 bp Feature: gene Location: 86125-87786 bp Feature: domain Description: RVT_N Location: 86182-86425 bp Feature: domain Description: RVT_N Location: 86182-86425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86470-87115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86470-87115 bp Feature: domain Description: GIIM Note: maturase Location: 87166-87400 bp Feature: domain Description: GIIM Note: maturase Location: 87166-87400 bp Feature: domain Description: HNHc Note: nucleases Location: 87616-87778 bp Feature: domain Description: HNHc Note: nucleases Location: 87616-87778 bp Feature: gene Location: 87830-88240 bp Feature: gene Location: 88786-89037 bp Feature: gene Location: 89386-91044 bp Feature: domain Description: RVT_N Location: 89443-89686 bp Feature: domain Description: RVT_N Location: 89443 -89686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89731-90376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8973 1-903 76 bp Feature: domain Description: GIIM Note: maturase Location: 90427-90661 bp Feature: domain Description: GIIM Note: maturase Location: 90427-90661 bp Feature: domain Description: HNHc Note: nucleases Location: 90868-91024 bp Feature: domain Description: HNHc Note: nucleases Location: 90868-91024 bp Feature: gene Location: 91099-91380 bp Feature: gene Location: 91760-92746 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 91775-92234 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 91775-9223 4 bp Feature: domain Description: Transposase_20 Location: 92375-92621 bp Feature: domain Description: Transposase_20 Location: 923 75-92621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)