myRT

myRT report for GCA_001969545.1_ASM196954v1

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Seq: LTDQ01000163.1 Enterococcus faecium strain VREr6 VRE6_contig163, whole genome shotgun sequence (3245 bp)
Overview 1 RT 1: 1-3221 bp Neighborhood of RT #1 [1, 3223] RVT-AbiP2 HsdM Feature: gene Location: 1-1464 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 337-802 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 337-802 bp Feature: gene Location: 1802-3223 bp Feature: domain Description: HsdM Location: 1823-3221 bp Feature: domain Description: HsdM Location: 1 823-3221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: LTDQ01000006.1 Enterococcus faecium strain VREr6 VRE6_contig6, whole genome shotgun sequence (145324 bp)
Overview 1 RT 1: 127532-132572 bp Neighborhood of RT #1 [127532, 132586] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 127532-127675 bp Feature: gene Location: 127768-128952 bp Feature: domain Description: HTH_XRE Location: 127798-127942 bp Feature: domain Description: HTH_XRE Location: 12 7798-12 7942 bp Feature: domain Description: Rol_Rep_N Location: 127975-128239 bp Feature: domain Description: Rol_Rep_N Location: 12 7975-12 82 39 bp Feature: domain Description: Rep_trans Location: 128263-128875 bp Feature: domain Description: Rep_trans Location: 12 82 63-12 8875 bp Feature: gene Location: 129832-131742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130165-130903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130165-130903 bp Feature: domain Description: HNHc Note: nucleases Location: 131458-131623 bp Feature: domain Description: HNHc Note: nucleases Location: 131458-13162 3 bp Feature: gene Location: 131930-132070 bp Feature: gene Location: 132083-132586 bp Feature: domain Description: ArdA Location: 132101-132572 bp Feature: domain Description: ArdA Location: 132 101-132 572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: LTDQ01000073.1 Enterococcus faecium strain VREr6 VRE6_contig73, whole genome shotgun sequence (36617 bp)
Overview 1 RT 1: 11-5341 bp Neighborhood of RT #1 [11, 5412] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 11-829 bp Feature: domain Description: AAA_10 Location: 17-815 bp Feature: domain Description: AAA_10 Location: 17-815 bp Feature: gene Location: 963-2747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1920 bp Feature: gene Location: 3486-5036 bp Feature: domain Description: AAA_10 Location: 4815-4998 bp Feature: domain Description: AAA_10 Location: 4815-4998 bp Feature: gene Location: 5023-5412 bp Feature: domain Description: TcpE Location: 5041-5341 bp Feature: domain Description: TcpE Location: 5041-53 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)