myRT

myRT report for GCA_001974775.2_ASM197477v2

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Seq: MPHV02000001.1 Streptomyces sp. WAC00263 unitig_0, whole genome shotgun sequence (11693175 bp)
Overview 1 RT 1: 227108-231644 bp 2 RT 2: 981707-987807 bp 3 RT 3: 1708314-1715134 bp 4 RT 4: 4858006-4863757 bp Neighborhood of RT #1 [227108, 231751] DUF4096 DDE_Tnp_1_2 RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 HTH_MerR-trunc HTH_17 DUF5372 Neighborhood of RT #2 [981707, 987806] DUF4096 COG3293 DEDD_Tnp_IS110 COG3547 RVT-GII GIIM PinE Zn_ribbon_recom YkfC Neighborhood of RT #3 [1708314, 1715136] CzcO Bthiol_YpdA DEXQc_UvrD RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 HTH_MerR-trunc HTH_17 group_II_RT_mat Neighborhood of RT #4 [4858006, 4863757] TrmB TrmB GIIM RVT-GII DDE_Tnp_1_4 Feature: gene Location: 227108-227458 bp Feature: domain Description: DUF4096 Location: 227141-227342 bp Feature: domain Description: DUF4096 Location: 2271 41 -227342 bp Feature: gene Location: 226578-227105 bp Feature: domain Description: DDE_Tnp_1_2 Location: 226818-227100 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 22681 8-2271 00 bp Feature: gene Location: 227538-228626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227544-228195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227544-2281 95 bp Feature: domain Description: GIIM Note: maturase Location: 228267-228486 bp Feature: domain Description: GIIM Note: maturase Location: 228267-228486 bp Feature: gene Location: 228634-231360 bp Feature: domain Description: PinE Location: 228679-229273 bp Feature: domain Description: PinE Location: 228679-229273 bp Feature: domain Description: Zn_ribbon_recom Location: 229621-229786 bp Feature: domain Description: Zn_ribbon_recom Location: 229621 -229786 bp Feature: domain Description: HTH_17 Location: 230482-230590 bp Feature: domain Description: HTH_1 7 Location: 230482-230590 bp Feature: domain Description: HTH_17 Location: 230695-230806 bp Feature: domain Description: HTH_1 7 Location: 230695-230806 bp Feature: domain Description: HTH_MerR-trunc Location: 230923-231028 bp Feature: domain Description: HTH_MerR-trunc Location: 230923-231 028 bp Feature: domain Description: HTH_17 Location: 231148-231244 bp Feature: domain Description: HTH_1 7 Location: 231 1 48-231 244 bp Feature: gene Location: 231497-231751 bp Feature: domain Description: DUF5372 Location: 231506-231644 bp Feature: domain Description: DUF5372 Location: 231 506-231 644 bp Feature: gene Location: 981707-982306 bp Feature: domain Description: DUF4096 Location: 981725-981938 bp Feature: domain Description: DUF4096 Location: 981 725-981 938 bp Feature: domain Description: COG3293 Location: 982142-982238 bp Feature: domain Description: COG3293 Location: 9821 42-982238 bp Feature: gene Location: 982328-983518 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 982337-982763 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 982337-982763 bp Feature: domain Description: COG3547 Location: 982877-983330 bp Feature: domain Description: COG3547 Location: 982877-983330 bp Feature: gene Location: 983660-984739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983666-984317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983666-98431 7 bp Feature: domain Description: GIIM Note: maturase Location: 984389-984617 bp Feature: domain Description: GIIM Note: maturase Location: 984389-98461 7 bp Feature: gene Location: 985166-987434 bp Feature: domain Description: PinE Location: 985214-985796 bp Feature: domain Description: PinE Location: 98521 4-985796 bp Feature: domain Description: Zn_ribbon_recom Location: 986153-986297 bp Feature: domain Description: Zn_ribbon_recom Location: 9861 53-986297 bp Feature: gene Location: 987444-987806 bp Feature: domain Description: YkfC Location: 987498-987807 bp Feature: domain Description: YkfC Location: 987498-987807 bp Feature: gene Location: 1708314-1709516 bp Feature: domain Description: CzcO Location: 1708317-1708938 bp Feature: domain Description: CzcO Location: 1 70831 7-1 708938 bp Feature: domain Description: Bthiol_YpdA Location: 1709229-1709487 bp Feature: domain Description: Bthiol_YpdA Location: 1 709229-1 709487 bp Feature: gene Location: 1709755-1710255 bp Feature: domain Description: DEXQc_UvrD Location: 1710040-1710178 bp Feature: domain Description: DEXQc_UvrD Location: 1 71 0040-1 71 01 78 bp Feature: gene Location: 1710689-1711696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1710692-1711313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 0692-1 71 1 31 3 bp Feature: domain Description: GIIM Note: maturase Location: 1711394-1711598 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 1 394-1 71 1 598 bp Feature: gene Location: 1711704-1714430 bp Feature: domain Description: PinE Location: 1711749-1712343 bp Feature: domain Description: PinE Location: 1 71 1 749-1 71 2343 bp Feature: domain Description: Zn_ribbon_recom Location: 1712691-1712856 bp Feature: domain Description: Zn_ribbon_recom Location: 1 71 2691 -1 71 2856 bp Feature: domain Description: HTH_17 Location: 1713552-1713660 bp Feature: domain Description: HTH_1 7 Location: 1 71 3552-1 71 3660 bp Feature: domain Description: HTH_17 Location: 1713765-1713876 bp Feature: domain Description: HTH_1 7 Location: 1 71 3765-1 71 3876 bp Feature: domain Description: HTH_MerR-trunc Location: 1713993-1714098 bp Feature: domain Description: HTH_MerR-trunc Location: 1 71 3993-1 71 4098 bp Feature: domain Description: HTH_17 Location: 1714218-1714314 bp Feature: domain Description: HTH_1 7 Location: 1 71 421 8-1 71 431 4 bp Feature: gene Location: 1714882-1715136 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1714924-1715134 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 71 4924-1 71 51 34 bp Feature: gene Location: 4858006-4858860 bp Feature: domain Description: TrmB Location: 4858096-4858297 bp Feature: domain Description: TrmB Location: 4858096-4858297 bp Feature: domain Description: TrmB Location: 4858714-4858849 bp Feature: domain Description: TrmB Location: 485871 4-4858849 bp Feature: gene Location: 4859091-4859384 bp Feature: domain Description: GIIM Note: maturase Location: 4859094-4859298 bp Feature: domain Description: GIIM Note: maturase Location: 4859094-4859298 bp Feature: gene Location: 4859530-4860486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4859899-4860487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4859899-4860487 bp Feature: gene Location: 4861241-4862575 bp Feature: domain Description: DDE_Tnp_1_4 Location: 4861256-4862576 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 4861 256-4862576 bp Feature: gene Location: 4863065-4863757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), HTH_MerR-trunc (cd04762), DUF5372 (pfam17342), COG3293 (Transposase )
DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), YkfC (COG3344), CzcO (COG2072), Bthiol_YpdA (TIGR04018), DEXQc_UvrD (cd17932), group_II_RT_mat (TIGR04416), TrmB (pfam01978), DDE_Tnp_1_4 (pfam13701)