myRT

myRT report for GCA_001981425.1_ASM198142v1

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Seq: MTSS01000040.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_40, whole genome shotgun sequence (3380 bp)
Overview 1 RT 1: 211-3290 bp Neighborhood of RT #1 [211, 3364] YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS_repeat YD_repeat_2x RVT-GII GIIM Feature: gene Location: 211-465 bp Feature: gene Location: 508-2079 bp Feature: domain Description: YD_repeat_2x Location: 697-811 bp Feature: domain Description: YD_repeat_2x Location: 697-81 1 bp Feature: domain Description: YD_repeat_2x Location: 877-967 bp Feature: domain Description: YD_repeat_2x Location: 877-967 bp Feature: domain Description: YD_repeat_2x Location: 1033-1114 bp Feature: domain Description: YD_repeat_2x Location: 1 033-1 1 1 4 bp Feature: domain Description: YD_repeat_2x Location: 1147-1201 bp Feature: domain Description: YD_repeat_2x Location: 1 1 47-1 201 bp Feature: domain Description: RHS_repeat Location: 1405-1486 bp Feature: domain Description: RHS_repeat Location: 1 405-1 486 bp Feature: domain Description: YD_repeat_2x Location: 1654-1735 bp Feature: domain Description: YD_repeat_2x Location: 1 654-1 735 bp Feature: gene Location: 2729-3364 bp Ori: ONF75626.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2732-2978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2732-2978 bp Feature: domain Description: GIIM Note: maturase Location: 3062-3290 bp Feature: domain Description: GIIM Note: maturase Location: 3062-3290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388)

Seq: MTSS01000014.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_14, whole genome shotgun sequence (118285 bp)
Overview 1 RT 1: 73509-81331 bp Neighborhood of RT #1 [73509, 81331] RVT-GII GIIM Feature: gene Location: 73509-74012 bp Feature: gene Location: 74471-74698 bp Feature: gene Location: 74790-76136 bp Ori: ONF77854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75123-75783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7512 3-75783 bp Feature: domain Description: GIIM Note: maturase Location: 75864-76056 bp Feature: domain Description: GIIM Note: maturase Location: 75864-76056 bp Feature: gene Location: 76657-77478 bp Feature: gene Location: 77672-81331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTSS01000001.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_1, whole genome shotgun sequence (421432 bp)
Overview 1 RT 1: 325948-333438 bp Neighborhood of RT #1 [325948, 333476] RVT-GII GIIM ABC_MJ0796_LolCDE_FtsE LolE LolE Feature: gene Location: 325948-327897 bp Feature: gene Location: 327885-328226 bp Feature: gene Location: 328204-329460 bp Ori: ONF81755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328417-329074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 28417-3 29074 bp Feature: domain Description: GIIM Note: maturase Location: 329158-329386 bp Feature: domain Description: GIIM Note: maturase Location: 3 29158-3 293 86 bp Feature: gene Location: 330285-330980 bp Ori: ONF81644.1 Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 330321-330969 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 3 3 03 21-3 3 0969 bp Feature: gene Location: 330987-333476 bp Ori: ONF81645.1 Feature: domain Description: LolE Location: 331002-332124 bp Feature: domain Description: LolE Location: 3 3 1002-3 3 2124 bp Feature: domain Description: LolE Location: 332724-333438 bp Feature: domain Description: LolE Location: 3 3 2724-3 3 3 43 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ABC_MJ0796_LolCDE_FtsE (cd03255), LolE (COG4591)

Seq: MTSS01000023.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_23, whole genome shotgun sequence (63387 bp)
Overview 1 RT 1: 27948-35622 bp Neighborhood of RT #1 [27948, 35622] DUF932 AE_Prim_S_like RVT-UG28b Feature: gene Location: 27948-28727 bp Ori: ONF76678.1 Feature: domain Description: DUF932 Location: 28014-28641 bp Feature: domain Description: DUF932 Location: 28014 -2864 1 bp Feature: gene Location: 28731-30346 bp Feature: domain Description: AE_Prim_S_like Location: 29055-29280 bp Feature: domain Description: AE_Prim_S_like Location: 29055-29280 bp Feature: gene Location: 31053-32810 bp Ori: ONF76700.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 31488-32202 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 314 88-32202 bp Feature: gene Location: 32894-33961 bp Feature: gene Location: 34612-35622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), AE_Prim_S_like (cl01287), RVT-UG28b