myRT

myRT report for GCA_001982305.1_ASM198230v1

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Seq: MKDU01000001.1 Lactobacillus plantarum strain RI-146 p1551o1945-12_S12_L001_R1_001_(paired)_contig_1, whole genome shotgun sequence (237717 bp)
Overview 1 RT 1: 74714-81122 bp Neighborhood of RT #1 [74714, 81142] HTH_28 HTH_28 PHA02517 RVT-UG12 PRK00103 DegQ Feature: gene Location: 74714-75130 bp Feature: domain Description: HTH_28 Location: 74780-74936 bp Feature: domain Description: HTH_28 Location: 74780-74936 bp Feature: domain Description: HTH_28 Location: 74975-75080 bp Feature: domain Description: HTH_28 Location: 74975-75080 bp Feature: gene Location: 75240-76136 bp Feature: domain Description: PHA02517 Location: 75336-76107 bp Feature: domain Description: PHA0251 7 Location: 75336-761 07 bp Feature: gene Location: 76958-78772 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 77477-77924 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 77477-77924 bp Feature: gene Location: 78846-79325 bp Feature: domain Description: PRK00103 Location: 78849-79323 bp Feature: domain Description: PRK001 03 Location: 78849-79323 bp Feature: gene Location: 79880-81142 bp Feature: domain Description: DegQ Location: 80000-81122 bp Feature: domain Description: DegQ Location: 80000-81 1 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG12, PRK00103 (rRNA large subunit methyltransferase; Provisional), DegQ (pfam08181)

Seq: MKDU01000010.1 Lactobacillus plantarum strain RI-146 p1551o1945-12_S12_L001_R1_001_(paired)_contig_10, whole genome shotgun sequence (16832 bp)
Overview 1 RT 1: 9503-14577 bp Neighborhood of RT #1 [9503, 14591] RVT-GII GIIM ABC2_membrane_2 Feature: gene Location: 9503-11095 bp Feature: gene Location: 11096-11314 bp Feature: gene Location: 11471-12862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11798-12416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11798-12 416 bp Feature: domain Description: GIIM Note: maturase Location: 12470-12689 bp Feature: domain Description: GIIM Note: maturase Location: 12 470-12 689 bp Feature: gene Location: 13503-13703 bp Feature: gene Location: 13842-14591 bp Feature: domain Description: ABC2_membrane_2 Location: 14028-14577 bp Feature: domain Description: ABC2 _membrane_2 Location: 1402 8-14577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ABC2_membrane_2 (pfam12679)

Seq: MKDU01000012.1 Lactobacillus plantarum strain RI-146 p1551o1945-12_S12_L001_R1_001_(paired)_contig_12, whole genome shotgun sequence (179051 bp)
Overview 1 RT 1: 95585-99247 bp Neighborhood of RT #1 [95585, 99247] RVT-GII GIIM fumC Feature: gene Location: 95585-95722 bp Feature: gene Location: 95850-96002 bp Feature: gene Location: 96064-97152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96172-96790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96172-96790 bp Feature: domain Description: GIIM Note: maturase Location: 96844-97063 bp Feature: domain Description: GIIM Note: maturase Location: 96844-97063 bp Feature: gene Location: 97711-99093 bp Feature: domain Description: fumC Location: 97714-99082 bp Feature: domain Description: fumC Location: 97714-99082 bp Feature: gene Location: 99107-99247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fumC (PRK00485)