myRT

myRT report for GCA_001982485.1_ASM198248v1

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Seq: MTPP01000200.1 Escherichia coli strain ICBEc05 Contig_212, whole genome shotgun sequence (40544 bp)
Overview 1 RT 1: 36872-40544 bp Neighborhood of RT #1 [36872, 40544] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 36872-37105 bp Feature: domain Description: DUF905 Location: 36902-37100 bp Feature: domain Description: DUF905 Location: 36902-371 00 bp Feature: gene Location: 37163-37648 bp Feature: domain Description: PRK13732 Location: 37166-37646 bp Feature: domain Description: PRK1 3732 Location: 371 66-37646 bp Feature: gene Location: 37798-39699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38065-38896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38065-38896 bp Feature: domain Description: Intron_maturas2 Location: 39010-39268 bp Feature: domain Description: Intron_maturas2 Location: 3901 0-39268 bp Feature: domain Description: HNHc Note: nucleases Location: 39442-39604 bp Feature: domain Description: HNHc Note: nucleases Location: 39442-39604 bp Feature: gene Location: 40348-40544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MTPP01000419.1 Escherichia coli strain ICBEc05 Contig_437, whole genome shotgun sequence (11821 bp)
Overview 1 RT 1: 7059-11367 bp Neighborhood of RT #1 [7059, 11367] Mop YgbA_NO RVT-Retrons Feature: gene Location: 7059-7369 bp Feature: domain Description: Mop Location: 7062-7191 bp Feature: domain Description: Mop Location: 7062 -7191 bp Feature: gene Location: 7408-7752 bp Feature: domain Description: YgbA_NO Location: 7420-7726 bp Feature: domain Description: YgbA_NO Location: 742 0-772 6 bp Feature: gene Location: 8671-9550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8674-8842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8674-8842 bp Feature: gene Location: 9540-10202 bp Feature: gene Location: 10381-11367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mop (TIGR00638), YgbA_NO (pfam11756), RVT-Retrons

Seq: MTPP01000327.1 Escherichia coli strain ICBEc05 Contig_345, whole genome shotgun sequence (11807 bp)
Overview 1 RT 1: 1-4218 bp Neighborhood of RT #1 [1, 4485] RhsA RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1_assoc Feature: gene Location: 1-1069 bp Feature: domain Description: RhsA Location: 25-814 bp Feature: domain Description: RhsA Location: 25-814 bp Feature: gene Location: 1066-1533 bp Feature: gene Location: 2161-3483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2437-3094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 7-3 094 bp Feature: domain Description: GIIM Note: maturase Location: 3184-3388 bp Feature: domain Description: GIIM Note: maturase Location: 3 184-3 3 88 bp Feature: gene Location: 3690-3878 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 3711-3873 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 3 711-3 873 bp Feature: gene Location: 4023-4485 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4044-4218 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4044-4218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)