myRT

myRT report for GCA_001982585.1_ASM198258v1

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Seq: MTPS01000145.1 Escherichia coli strain ICBEcBL-II-13 NODE_161_length_4241_cov_19.138647, whole genome shotgun sequence (4289 bp)
Overview 1 RT 1: 286-3963 bp Neighborhood of RT #1 [286, 3968] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 286-492 bp Feature: gene Location: 1141-3042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408-2239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 408-2239 bp Feature: domain Description: Intron_maturas2 Location: 2353-2611 bp Feature: domain Description: Intron_maturas2 Location: 2353-261 1 bp Feature: domain Description: HNHc Note: nucleases Location: 2785-2947 bp Feature: domain Description: HNHc Note: nucleases Location: 2785-2947 bp Feature: gene Location: 3192-3677 bp Feature: domain Description: PRK13732 Location: 3195-3675 bp Feature: domain Description: PRK1 3732 Location: 31 95-3675 bp Feature: gene Location: 3735-3968 bp Feature: domain Description: DUF905 Location: 3765-3963 bp Feature: domain Description: DUF905 Location: 3765-3963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006)

Seq: MTPS01000307.1 Escherichia coli strain ICBEcBL-II-13 NODE_345_length_30913_cov_11.863391, whole genome shotgun sequence (30961 bp)
Overview 1 RT 1: 17065-21590 bp Neighborhood of RT #1 [17065, 21598] RVT-Retrons YgbA_NO Mop Mop Feature: gene Location: 17065-18051 bp Feature: gene Location: 18230-18892 bp Feature: gene Location: 18882-19916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18885-19461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18885-19461 bp Feature: gene Location: 20787-21131 bp Feature: domain Description: YgbA_NO Location: 20799-21105 bp Feature: domain Description: YgbA_NO Location: 2 0799-2 1105 bp Feature: gene Location: 21170-21598 bp Feature: domain Description: Mop Location: 21173-21374 bp Feature: domain Description: Mop Location: 2 1173-2 1374 bp Feature: domain Description: Mop Location: 21389-21590 bp Feature: domain Description: Mop Location: 2 1389-2 1590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YgbA_NO (pfam11756), Mop (TIGR00638)

Seq: MTPS01000194.1 Escherichia coli strain ICBEcBL-II-13 NODE_216_length_11445_cov_12.215640, whole genome shotgun sequence (11493 bp)
Overview 1 RT 1: 150-6317 bp Neighborhood of RT #1 [150, 6697] RVT-GII GIIM PAAR_RHS YD_repeat_2x RhsA YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x YD_repeat_2x RHS Rhs_assc_core Feature: gene Location: 150-1472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1377 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 77 bp Feature: gene Location: 2100-2567 bp Feature: gene Location: 2564-6697 bp Feature: domain Description: PAAR_RHS Location: 2573-3008 bp Feature: domain Description: PAAR_RHS Location: 2573 -3 008 bp Feature: domain Description: YD_repeat_2x Location: 3794-3845 bp Feature: domain Description: YD_repeat_2x Location: 3 794-3 845 bp Feature: domain Description: RhsA Location: 3971-4214 bp Feature: domain Description: RhsA Location: 3 971-4214 bp Feature: domain Description: YD_repeat_2x Location: 4310-4418 bp Feature: domain Description: YD_repeat_2x Location: 43 10-4418 bp Feature: domain Description: YD_repeat_2x Location: 4436-4556 bp Feature: domain Description: YD_repeat_2x Location: 443 6-4556 bp Feature: domain Description: YD_repeat_2x Location: 4562-4682 bp Feature: domain Description: YD_repeat_2x Location: 4562-4682 bp Feature: domain Description: YD_repeat_2x Location: 4757-4859 bp Feature: domain Description: YD_repeat_2x Location: 4757-4859 bp Feature: domain Description: YD_repeat_2x Location: 4955-5045 bp Feature: domain Description: YD_repeat_2x Location: 4955-5045 bp Feature: domain Description: YD_repeat_2x Location: 5108-5213 bp Feature: domain Description: YD_repeat_2x Location: 5108-5213 bp Feature: domain Description: YD_repeat_2x Location: 5735-5828 bp Feature: domain Description: YD_repeat_2x Location: 573 5-5828 bp Feature: domain Description: RHS Location: 5999-6095 bp Feature: domain Description: RHS Location: 5999-6095 bp Feature: domain Description: Rhs_assc_core Location: 6116-6317 bp Feature: domain Description: Rhs_assc_core Location: 6116-63 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_RHS (cd14742), YD_repeat_2x (TIGR01643), RhsA (COG3209), RHS (pfam03527), Rhs_assc_core (TIGR03696)