myRT

myRT report for GCA_001982635.1_ASM198263v1

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Seq: MKFI01000001.1 Bradyrhizobium mercantei strain SEMIA 6399 scaffold1.1, whole genome shotgun sequence (1570373 bp)
Overview 1 RT 1: 404857-413259 bp Neighborhood of RT #1 [404857, 413294] WGR_DNA_ligase SWIM RVT-Retrons PRK06033 PRK14341 Feature: gene Location: 404857-408015 bp Feature: domain Description: WGR_DNA_ligase Location: 404875-405109 bp Feature: domain Description: WGR_DNA_ligase Location: 404875-4051 09 bp Feature: gene Location: 408012-409682 bp Feature: domain Description: SWIM Location: 409512-409623 bp Feature: domain Description: SWIM Location: 40951 2-409623 bp Feature: gene Location: 410038-411855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 410590-411211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 0590-41 1 21 1 bp Feature: gene Location: 412260-412505 bp Feature: domain Description: PRK06033 Location: 412263-412494 bp Feature: domain Description: PRK06033 Location: 41 2263-41 2494 bp Feature: gene Location: 412566-413294 bp Feature: domain Description: PRK14341 Location: 412629-413259 bp Feature: domain Description: PRK1 4341 Location: 41 2629-41 3259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), SWIM (pfam04434), RVT-Retrons, PRK06033 (flagellar motor switch protein FliN), PRK14341 (lipoyl(octanoyl) transferase LipB)

Seq: MKFI01000009.1 Bradyrhizobium mercantei strain SEMIA 6399 scaffold9.1, whole genome shotgun sequence (264174 bp)
Overview 1 RT 1: 83423-88053 bp Neighborhood of RT #1 [83423, 88053] COG5340 COG2253 RVT-GII GIIM AbiEii WYL Feature: gene Location: 83423-84235 bp Feature: domain Description: COG5340 Location: 83465-84203 bp Feature: domain Description: COG5340 Location: 83465-842 03 bp Feature: gene Location: 84232-84468 bp Feature: domain Description: COG2253 Location: 84250-84430 bp Feature: domain Description: COG2 2 53 Location: 842 50-84430 bp Feature: gene Location: 85047-86567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85353-86115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85353-86115 bp Feature: domain Description: GIIM Note: maturase Location: 86184-86415 bp Feature: domain Description: GIIM Note: maturase Location: 86184-86415 bp Feature: gene Location: 86962-87876 bp Feature: domain Description: AbiEii Location: 86968-87232 bp Feature: domain Description: AbiEii Location: 86968-872 32 bp Feature: domain Description: WYL Location: 87394-87622 bp Feature: domain Description: WYL Location: 87394-8762 2 bp Feature: gene Location: 87892-88053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), COG2253 (Predicted nucleotidyltransferase component of viral defense system ), RVT-GII, GIIM (pfam08388), AbiEii (pfam08843), WYL (pfam13280)