myRT

myRT report for GCA_001983015.1_ASM198301v1

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Seq: MOMD01000045.1 Frankia sp. CcI156 contig_44, whole genome shotgun sequence (16030 bp)
Overview 1 RT 1: 9973-15420 bp Neighborhood of RT #1 [9973, 15420] KOG2565 PIN_MtVapC27-VapC40_like RVT-GII GIIM Feature: gene Location: 9973-11232 bp Ori: ONH24386.1 Feature: domain Description: KOG2565 Location: 10030-11206 bp Feature: domain Description: KOG2565 Location: 1 0030-1 1 206 bp Feature: gene Location: 11420-11632 bp Ori: ONH24387.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 11495-11615 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 1 1 495-1 1 61 5 bp Feature: gene Location: 11801-13177 bp Ori: ONH24388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12116-12710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 1 6-1 271 0 bp Feature: domain Description: GIIM Note: maturase Location: 12833-13037 bp Feature: domain Description: GIIM Note: maturase Location: 1 2833-1 3037 bp Feature: gene Location: 13946-15082 bp Feature: gene Location: 15076-15420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) ), PIN_MtVapC27-VapC40_like (cd18681), RVT-GII, GIIM (pfam08388)

Seq: MOMD01000123.1 Frankia sp. CcI156 contig_123, whole genome shotgun sequence (2310 bp)
Overview 1 RT 1: 931-1958 bp Neighborhood of RT #1 [931, 2113] RVT-GII GIIM Feature: gene Location: 931-1134 bp Feature: gene Location: 1144-1518 bp Feature: gene Location: 1523-2113 bp Ori: ONH21804.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1529-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 9-1664 bp Feature: domain Description: GIIM Note: maturase Location: 1733-1958 bp Feature: domain Description: GIIM Note: maturase Location: 1733-1958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMD01000043.1 Frankia sp. CcI156 contig_42, whole genome shotgun sequence (73129 bp)
Overview 1 RT 1: 56716-62510 bp Neighborhood of RT #1 [56716, 62518] PRK07819 PRK07819 HTH_ARSR RVT-GII GIIM FldA Methyltransf_19 Feature: gene Location: 56716-58494 bp Ori: ONH24491.1 Feature: domain Description: PRK07819 Location: 56740-57574 bp Feature: domain Description: PRK07819 Location: 56740-57574 bp Feature: domain Description: PRK07819 Location: 57655-58492 bp Feature: domain Description: PRK07819 Location: 57655-58492 bp Feature: gene Location: 58499-58843 bp Ori: ONH24492.1 Feature: domain Description: HTH_ARSR Location: 58514-58727 bp Feature: domain Description: HTH_ARSR Location: 58514-58727 bp Feature: gene Location: 59805-60560 bp Ori: ONH24493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59898-60180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59898-60180 bp Feature: domain Description: GIIM Note: maturase Location: 60261-60465 bp Feature: domain Description: GIIM Note: maturase Location: 60261-60465 bp Feature: gene Location: 60645-61199 bp Ori: ONH24507.1 Feature: domain Description: FldA Location: 60648-60828 bp Feature: domain Description: FldA Location: 60648-60828 bp Feature: gene Location: 61700-62518 bp Ori: ONH24494.1 Feature: domain Description: Methyltransf_19 Location: 61727-62510 bp Feature: domain Description: Methyltransf_19 Location: 61727-62510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07819 (3-hydroxybutyryl-CoA dehydrogenase; Validated), HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388), FldA (COG0716), Methyltransf_19 (pfam04672)

Seq: MOMD01000088.1 Frankia sp. CcI156 contig_88, whole genome shotgun sequence (13026 bp)
Overview 1 RT 1: 1-2190 bp Neighborhood of RT #1 [1, 2195] RVT-GII GIIM PRK11409 YoeB_toxin Feature: gene Location: 1-575 bp Feature: gene Location: 602-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629-833 bp Feature: domain Description: GIIM Note: maturase Location: 920-1127 bp Feature: domain Description: GIIM Note: maturase Location: 920-1127 bp Feature: gene Location: 1681-1938 bp Ori: ONH22222.1 Feature: domain Description: PRK11409 Location: 1693-1918 bp Feature: domain Description: PRK114 09 Location: 1693-1918 bp Feature: gene Location: 1935-2195 bp Ori: ONH22213.1 Feature: domain Description: YoeB_toxin Location: 1950-2190 bp Feature: domain Description: YoeB_toxin Location: 1950-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM), YoeB_toxin (pfam06769)

Seq: MOMD01000134.1 Frankia sp. CcI156 contig_134, whole genome shotgun sequence (1645 bp)
Overview 1 RT 1: 1-1293 bp Neighborhood of RT #1 [1, 1481] RVT-GII Feature: gene Location: 1-129 bp Feature: gene Location: 204-1481 bp Ori: ONH21761.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603-1293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603-1293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOMD01000015.1 Frankia sp. CcI156 contig_14, whole genome shotgun sequence (171570 bp)
Overview 1 RT 1: 164373-171157 bp Neighborhood of RT #1 [164373, 171186] RVT_N RVT-GII GIIM KOG0776 Feature: gene Location: 164373-164612 bp Feature: gene Location: 165817-166665 bp Feature: gene Location: 167639-169432 bp Ori: ONH27705.1 Feature: domain Description: RVT_N Location: 167726-167966 bp Feature: domain Description: RVT_N Location: 16 7726 -16 796 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168023-168668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 8023-16 86 6 8 bp Feature: domain Description: GIIM Note: maturase Location: 168737-168965 bp Feature: domain Description: GIIM Note: maturase Location: 16 8737-16 896 5 bp Feature: gene Location: 169532-170320 bp Feature: gene Location: 170938-171186 bp Ori: ONH27707.1 Feature: domain Description: KOG0776 Location: 170941-171157 bp Feature: domain Description: KOG0776 Location: 170941-171157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG0776 (KOG0776, Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase )