myRT

myRT report for GCA_001983165.1_ASM198316v1

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Seq: MNPU01000056.1 Pseudomonas gessardii strain DSM 17152 56_40054_36.9429, whole genome shotgun sequence (40054 bp)
Overview 1 RT 1: 555-4679 bp Neighborhood of RT #1 [555, 4714] DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 555-809 bp Feature: gene Location: 878-1069 bp Ori: ONH37897.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 929-1043 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 929-1 043 bp Feature: gene Location: 1626-3020 bp Ori: ONH37898.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932-2595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 932-2595 bp Feature: domain Description: GIIM Note: maturase Location: 2664-2874 bp Feature: domain Description: GIIM Note: maturase Location: 2664-2874 bp Feature: gene Location: 3075-4337 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3162-3372 bp Feature: domain Description: LZ_Tnp_IS66 Location: 31 62-3372 bp Feature: domain Description: zf-IS66 Location: 3402-3525 bp Feature: domain Description: zf-IS66 Location: 3402-3525 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3570-4338 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3570-4338 bp Feature: gene Location: 4355-4714 bp Ori: ONH37899.1 Feature: domain Description: TnpB_IS66 Location: 4385-4679 bp Feature: domain Description: TnpB_IS66 Location: 4385-4679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: MNPU01000095.1 Pseudomonas gessardii strain DSM 17152 95_4995_71.2225, whole genome shotgun sequence (4995 bp)
Overview 1 RT 1: 560-4035 bp Neighborhood of RT #1 [560, 4035] RVT-GII GIIM PitA Feature: gene Location: 560-1870 bp Ori: ONH35415.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1451 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1730 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1730 bp Feature: gene Location: 2028-3503 bp Ori: ONH35416.1 Feature: domain Description: PitA Location: 2070-3489 bp Feature: domain Description: PitA Location: 2 070-3489 bp Feature: gene Location: 3835-4035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PitA (COG0306)

Seq: MNPU01000120.1 Pseudomonas gessardii strain DSM 17152 120_1923_599.941, whole genome shotgun sequence (1923 bp)
Overview 1 RT 1: 431-1673 bp Neighborhood of RT #1 [431, 1852] RVT-GII GIIM Feature: gene Location: 431-1852 bp Ori: ONH34851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788-1403 bp Feature: domain Description: GIIM Note: maturase Location: 1460-1673 bp Feature: domain Description: GIIM Note: maturase Location: 1460-1673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MNPU01000037.1 Pseudomonas gessardii strain DSM 17152 37_59494_40.8052, whole genome shotgun sequence (59494 bp)
Overview 1 RT 1: 50075-56347 bp Neighborhood of RT #1 [50075, 56355] YqiC TIGR00368 RVT-UG3 RVT-UG8 PHA02517 InsE Feature: gene Location: 50075-50335 bp Ori: ONH39091.1 Feature: domain Description: YqiC Location: 50084-50324 bp Feature: domain Description: YqiC Location: 50084 -50324 bp Feature: gene Location: 50559-51467 bp Feature: domain Description: TIGR00368 Location: 50577-51468 bp Feature: domain Description: TIGR00368 Location: 50577-514 68 bp Feature: gene Location: 51729-52952 bp Ori: ONH39092.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52017-52491 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 52017-524 91 bp Feature: gene Location: 52945-54936 bp Ori: ONH39093.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 53470-53908 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 534 70-53908 bp Feature: gene Location: 55220-56059 bp Ori: ONH39103.1 Feature: domain Description: PHA02517 Location: 55271-56051 bp Feature: domain Description: PHA02517 Location: 55271-56051 bp Feature: gene Location: 56071-56355 bp Ori: ONH39094.1 Feature: domain Description: InsE Location: 56083-56347 bp Feature: domain Description: InsE Location: 56083-5634 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqiC (COG2960), TIGR00368 (Mg chelatase-related protein), RVT-UG3, RVT-UG8, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MNPU01000028.1 Pseudomonas gessardii strain DSM 17152 28_73074_33.9092, whole genome shotgun sequence (73074 bp)
Overview 1 RT 1: 65419-70337 bp Neighborhood of RT #1 [65419, 70354] RVT-GII PRK09413 PRK14702 Feature: gene Location: 65419-66378 bp Feature: gene Location: 68117-68551 bp Feature: gene Location: 68551-69090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68731-69088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68731-69088 bp Feature: gene Location: 69141-69494 bp Ori: ONH39759.1 Feature: domain Description: PRK09413 Location: 69180-69492 bp Feature: domain Description: PRK09413 Location: 69180-69492 bp Feature: gene Location: 69614-70354 bp Ori: ONH39760.1 Feature: domain Description: PRK14702 Location: 69620-70337 bp Feature: domain Description: PRK14702 Location: 69620-70337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09413 (IS2 repressor TnpA; Reviewed), PRK14702 (insertion element IS2 transposase InsD; Provisional)