myRT

myRT report for GCA_001983245.1_ASM198324v1

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Seq: MTCV01000034.1 Yersinia enterocolitica strain Y1WildBoar1B NODE_34_length_26830_cov_146.001, whole genome shotgun sequence (26830 bp)
Overview 1 RT 1: 1175-5837 bp 2 RT 2: 21828-25824 bp Neighborhood of RT #1 [1175, 5837] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [21828, 26081] PRK15287 PRK15288 RVT-UG4 DDE_Tnp_1 Feature: gene Location: 1175-2326 bp Feature: domain Description: HTH_38 Location: 1208-1298 bp Feature: domain Description: HTH_38 Location: 1 208-1 298 bp Feature: domain Description: Tra8 Location: 1334-2315 bp Feature: domain Description: Tra8 Location: 1 334-231 5 bp Feature: gene Location: 2420-2824 bp Feature: domain Description: PHA02517 Location: 2426-2759 bp Feature: domain Description: PHA0251 7 Location: 2426-2759 bp Feature: gene Location: 3416-4939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3689-4421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3689-4421 bp Feature: domain Description: GIIM Note: maturase Location: 4496-4694 bp Feature: domain Description: GIIM Note: maturase Location: 4496-4694 bp Feature: gene Location: 5104-5526 bp Feature: domain Description: PHA02517 Location: 5107-5488 bp Feature: domain Description: PHA0251 7 Location: 51 07-5488 bp Feature: gene Location: 5688-5837 bp Feature: gene Location: 21828-22334 bp Feature: domain Description: PRK15287 Location: 21879-22332 bp Feature: domain Description: PRK1 5287 Location: 21 879-22332 bp Feature: gene Location: 22350-22889 bp Feature: domain Description: PRK15288 Location: 22386-22821 bp Feature: domain Description: PRK1 5288 Location: 22386-22821 bp Feature: gene Location: 22882-23862 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 23227-23668 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 23227-23668 bp Feature: gene Location: 23911-24609 bp Feature: gene Location: 24888-26081 bp Feature: domain Description: DDE_Tnp_1 Location: 25197-25824 bp Feature: domain Description: DDE_Tnp_1 Location: 251 97-25824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK15287 (fimbrial minor subunit StfF), PRK15288 (putative minor fimbrial subunit StfG; Provisional), RVT-UG4, DDE_Tnp_1 (pfam01609)