myRT

myRT report for GCA_001983455.1_ASM198345v1

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Seq: LJDB01000055.1 Epulopiscium sp. SCG-B11WGA-EpuloA1 SCGB11WGA_5, whole genome shotgun sequence (91858 bp)
Overview 1 RT 1: 70840-78631 bp Neighborhood of RT #1 [70840, 78645] Lig pcrA RVT-GII HNHc pcrA PHP_HisPPase_Ycdx_like Feature: gene Location: 70840-72786 bp Feature: domain Description: Lig Location: 70846-72778 bp Feature: domain Description: Lig Location: 70846-72778 bp Feature: gene Location: 73028-74578 bp Feature: domain Description: pcrA Location: 73040-74561 bp Feature: domain Description: pcrA Location: 73040-74561 bp Feature: gene Location: 74668-76509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75004-75706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75004-75706 bp Feature: domain Description: HNHc Note: nucleases Location: 76291-76390 bp Feature: domain Description: HNHc Note: nucleases Location: 76291 -76390 bp Feature: gene Location: 77217-77912 bp Feature: domain Description: pcrA Location: 77220-77880 bp Feature: domain Description: pcrA Location: 77220-77880 bp Feature: gene Location: 77923-78645 bp Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 77935-78631 bp Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 77935-78631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lig (COG0272), pcrA (TIGR01073), RVT-GII, HNHc (smart00507), PHP_HisPPase_Ycdx_like (cd07437)

Seq: LJDB01000010.1 Epulopiscium sp. SCG-B11WGA-EpuloA1 SCGB11WGA_107, whole genome shotgun sequence (76590 bp)
Overview 1 RT 1: 27793-38595 bp Neighborhood of RT #1 [27793, 38843] lanti_perm_MutG PRK00566 RVT-GII PRK00566 rpoB rpoB Feature: gene Location: 27793-28527 bp Feature: domain Description: lanti_perm_MutG Location: 27808-28513 bp Feature: domain Description: lanti_perm_MutG Location: 2 7808-2 8513 bp Feature: gene Location: 28587-30773 bp Feature: domain Description: PRK00566 Location: 28590-30765 bp Feature: domain Description: PRK00566 Location: 2 8590-30765 bp Feature: gene Location: 30880-32671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31138-31828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31138-3182 8 bp Feature: gene Location: 33540-34898 bp Feature: domain Description: PRK00566 Location: 33558-34899 bp Feature: domain Description: PRK00566 Location: 33558-34899 bp Feature: gene Location: 34941-38843 bp Feature: domain Description: rpoB Location: 34974-35592 bp Feature: domain Description: rpoB Location: 34974-35592 bp Feature: domain Description: rpoB Location: 35595-38595 bp Feature: domain Description: rpoB Location: 35595-38595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lanti_perm_MutG (TIGR03733), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, rpoB (TIGR02013)

Seq: LJDB01000057.1 Epulopiscium sp. SCG-B11WGA-EpuloA1 SCGB11WGA_51, whole genome shotgun sequence (68133 bp)
Overview 1 RT 1: 54321-63013 bp Neighborhood of RT #1 [54321, 63015] UgpE UgpA RVT-GII HNHc dnaE CitM Feature: gene Location: 54321-55139 bp Feature: domain Description: UgpE Location: 54336-55134 bp Feature: domain Description: UgpE Location: 543 3 6-5513 4 bp Feature: gene Location: 55143-55625 bp Feature: domain Description: UgpA Location: 55146-55617 bp Feature: domain Description: UgpA Location: 55146-55617 bp Feature: gene Location: 55715-57583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56027-56750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56027-56750 bp Feature: domain Description: HNHc Note: nucleases Location: 57293-57434 bp Feature: domain Description: HNHc Note: nucleases Location: 57293 -5743 4 bp Feature: gene Location: 58308-61442 bp Feature: domain Description: dnaE Location: 58335-61404 bp Feature: domain Description: dnaE Location: 583 3 5-61404 bp Feature: gene Location: 61708-63015 bp Feature: domain Description: CitM Location: 61717-63013 bp Feature: domain Description: CitM Location: 61717-63 013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), UgpA (COG1175), RVT-GII, HNHc (smart00507), dnaE (PRK07374), CitM (COG2851)

Seq: LJDB01000043.1 Epulopiscium sp. SCG-B11WGA-EpuloA1 SCGB11WGA_39, whole genome shotgun sequence (164668 bp)
Overview 1 RT 1: 126794-133750 bp Neighborhood of RT #1 [126794, 133750] PRK05580 PRK05580 PRK14597 RVT-GII fmt Feature: gene Location: 126794-128806 bp Feature: domain Description: PRK05580 Location: 126827-127148 bp Feature: domain Description: PRK05580 Location: 126827-12714 8 bp Feature: domain Description: PRK05580 Location: 127169-128801 bp Feature: domain Description: PRK05580 Location: 127169-128801 bp Feature: gene Location: 128820-129305 bp Feature: domain Description: PRK14597 Location: 128835-129267 bp Feature: domain Description: PRK14 597 Location: 128835-129267 bp Feature: gene Location: 130029-131890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130341-130746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13034 1-13074 6 bp Feature: gene Location: 132015-132950 bp Feature: domain Description: fmt Location: 132018-132942 bp Feature: domain Description: fmt Location: 132018-13294 2 bp Feature: gene Location: 133220-133750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05580 (primosome assembly protein PriA; Validated), PRK14597 (peptide deformylase; Provisional), RVT-GII, fmt (TIGR00460)