myRT

myRT report for GCA_001983475.1_ASM198347v1

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Seq: LJHD01000103.1 Epulopiscium sp. SCG-D08WGA-EpuloA1 SCGD08WGA_191, whole genome shotgun sequence (23909 bp)
Overview 1 RT 1: 18511-23207 bp Neighborhood of RT #1 [18511, 23245] Met_tRNA_FMT_C fmt RVT-GII HNHc def Feature: gene Location: 18511-18720 bp Feature: domain Description: Met_tRNA_FMT_C Location: 18514-18667 bp Feature: domain Description: Met_tRNA_FMT_C Location: 1 851 4-1 8667 bp Feature: gene Location: 19324-20133 bp Feature: domain Description: fmt Location: 19411-20122 bp Feature: domain Description: fmt Location: 1 941 1 -201 22 bp Feature: gene Location: 20174-22036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20486-21209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20486-21 209 bp Feature: domain Description: HNHc Note: nucleases Location: 21749-21890 bp Feature: domain Description: HNHc Note: nucleases Location: 21 749-21 890 bp Feature: gene Location: 22760-23245 bp Feature: domain Description: def Location: 22763-23207 bp Feature: domain Description: def Location: 22763-23207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Met_tRNA_FMT_C (cd08704), fmt (TIGR00460), RVT-GII, HNHc (smart00507), def (PRK00150)

Seq: LJHD01000283.1 Epulopiscium sp. SCG-D08WGA-EpuloA1 SCGD08WGA_69, whole genome shotgun sequence (32943 bp)
Overview 1 RT 1: 6896-11689 bp 2 RT 2: 26830-32927 bp Neighborhood of RT #1 [6896, 11691] fabD enACPred_II RVT-GII Intron_maturas2 enACPred_II acpP Neighborhood of RT #2 [26830, 32941] spore_YyaC spore_YyaC PTS_IIA_man RVT-GII Intron_maturas2 pgi Tmk Feature: gene Location: 6896-7783 bp Feature: domain Description: fabD Location: 6899-7718 bp Feature: domain Description: fabD Location: 6899-7718 bp Feature: gene Location: 8143-8643 bp Feature: domain Description: enACPred_II Location: 8146-8617 bp Feature: domain Description: enACPred_II Location: 8146-8617 bp Feature: gene Location: 8748-10348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9000-9684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9000-9684 bp Feature: domain Description: Intron_maturas2 Location: 9759-10062 bp Feature: domain Description: Intron_maturas2 Location: 9759-10062 bp Feature: gene Location: 11001-11441 bp Feature: domain Description: enACPred_II Location: 11007-11442 bp Feature: domain Description: enACPred_II Location: 11007-11442 bp Feature: gene Location: 11464-11691 bp Feature: domain Description: acpP Location: 11470-11689 bp Feature: domain Description: acpP Location: 11470-11689 bp Feature: gene Location: 26830-27483 bp Feature: domain Description: spore_YyaC Location: 26956-27298 bp Feature: domain Description: spore_YyaC Location: 2 6956-2 72 98 bp Feature: domain Description: spore_YyaC Location: 27331-27424 bp Feature: domain Description: spore_YyaC Location: 2 7331-2 742 4 bp Feature: gene Location: 28033-28455 bp Feature: domain Description: PTS_IIA_man Location: 28051-28354 bp Feature: domain Description: PTS_IIA_man Location: 2 8051-2 8354 bp Feature: gene Location: 28992-30335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29232-29835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 32 -2 9835 bp Feature: domain Description: Intron_maturas2 Location: 29898-30207 bp Feature: domain Description: Intron_maturas2 Location: 2 9898-302 07 bp Feature: gene Location: 30951-32258 bp Feature: domain Description: pgi Location: 30957-32238 bp Feature: domain Description: pgi Location: 30957-32 2 38 bp Feature: gene Location: 32330-32941 bp Feature: domain Description: Tmk Location: 32333-32927 bp Feature: domain Description: Tmk Location: 32 333-32 92 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT enACPred_II (TIGR03151), acpP (PRK00982), fabD (TIGR00128), RVT-GII, Intron_maturas2 (pfam01348), spore_YyaC (TIGR02841), PTS_IIA_man (cl00025), pgi (PRK14097), Tmk (COG0125)

Seq: LJHD01000242.1 Epulopiscium sp. SCG-D08WGA-EpuloA1 SCGD08WGA_316, whole genome shotgun sequence (27126 bp)
Overview 1 RT 1: 13681-21630 bp Neighborhood of RT #1 [13681, 21644] Lig pcrA RVT_N RVT-GII GIIM pcrA PHP_HisPPase_Ycdx_like Feature: gene Location: 13681-15627 bp Feature: domain Description: Lig Location: 13687-15622 bp Feature: domain Description: Lig Location: 13 687-15622 bp Feature: gene Location: 15720-17270 bp Feature: domain Description: pcrA Location: 15732-17238 bp Feature: domain Description: pcrA Location: 1573 2-1723 8 bp Feature: gene Location: 17410-18921 bp Feature: RT Description: RVT_N Location: 17458-17701 bp Feature: RT Description: RVT_N Location: 17458-17701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17758-18400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17758-18400 bp Feature: domain Description: GIIM Note: maturase Location: 18466-18697 bp Feature: domain Description: GIIM Note: maturase Location: 18466-18697 bp Feature: gene Location: 20234-20911 bp Feature: domain Description: pcrA Location: 20237-20897 bp Feature: domain Description: pcrA Location: 2023 7-20897 bp Feature: gene Location: 20922-21644 bp Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 20934-21630 bp Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 2093 4-2163 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lig (COG0272), pcrA (TIGR01073), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHP_HisPPase_Ycdx_like (cd07437)