myRT

myRT report for GCA_001983515.1_ASM198351v1

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Seq: LJHH01000040.1 Epulopiscium sp. SCG-C06WGA-EpuloA1 SCGC06WGA_134, whole genome shotgun sequence (8642 bp)
Overview 1 RT 1: 1313-8642 bp Neighborhood of RT #1 [1313, 8642] lanti_perm_MutG PRK00566 RVT-GII HNHc PRK00566 Feature: gene Location: 1313-2047 bp Feature: domain Description: lanti_perm_MutG Location: 1328-2033 bp Feature: domain Description: lanti_perm_MutG Location: 1 328-2033 bp Feature: gene Location: 2107-4293 bp Feature: domain Description: PRK00566 Location: 2110-4285 bp Feature: domain Description: PRK00566 Location: 21 1 0-4285 bp Feature: gene Location: 4400-6193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4658-5384 bp Feature: domain Description: HNHc Note: nucleases Location: 5942-6083 bp Feature: domain Description: HNHc Note: nucleases Location: 5942-6083 bp Feature: gene Location: 7062-8420 bp Feature: domain Description: PRK00566 Location: 7080-8421 bp Feature: domain Description: PRK00566 Location: 7080-8421 bp Feature: gene Location: 8463-8642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lanti_perm_MutG (TIGR03733), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, HNHc (smart00507)

Seq: LJHH01000083.1 Epulopiscium sp. SCG-C06WGA-EpuloA1 SCGC06WGA_29, whole genome shotgun sequence (9989 bp)
Overview 1 RT 1: 100-4509 bp Neighborhood of RT #1 [100, 4538] thiH RVT-GII HNHc thiH ECF_ThiT_YuaJ Feature: gene Location: 100-630 bp Feature: domain Description: thiH Location: 133-601 bp Feature: domain Description: thiH Location: 133-601 bp Feature: gene Location: 1350-3212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 385 bp Feature: domain Description: HNHc Note: nucleases Location: 2928-3066 bp Feature: domain Description: HNHc Note: nucleases Location: 2 92 8-3066 bp Feature: gene Location: 3305-3907 bp Feature: domain Description: thiH Location: 3308-3899 bp Feature: domain Description: thiH Location: 3308-3899 bp Feature: gene Location: 3927-4538 bp Feature: domain Description: ECF_ThiT_YuaJ Location: 4014-4509 bp Feature: domain Description: ECF_ThiT_YuaJ Location: 4014-4509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thiH (TIGR02351), RVT-GII, HNHc (smart00507), ECF_ThiT_YuaJ (TIGR02357)

Seq: LJHH01000018.1 Epulopiscium sp. SCG-C06WGA-EpuloA1 SCGC06WGA_114, whole genome shotgun sequence (12357 bp)
Overview 1 RT 1: 7281-12224 bp Neighborhood of RT #1 [7281, 12357] PRK05580 PRK05580 PRK14597 RVT-GII RVT-GII HNHc Feature: gene Location: 7281-9293 bp Feature: domain Description: PRK05580 Location: 7314-7635 bp Feature: domain Description: PRK05580 Location: 73 14-763 5 bp Feature: domain Description: PRK05580 Location: 7656-9288 bp Feature: domain Description: PRK05580 Location: 7656-9288 bp Feature: gene Location: 9307-9792 bp Feature: domain Description: PRK14597 Location: 9322-9754 bp Feature: domain Description: PRK14597 Location: 93 22-9754 bp Feature: gene Location: 10516-11460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10828-11455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10828-11455 bp Feature: gene Location: 11479-11718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11482-11551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11482-11551 bp Feature: gene Location: 11744-12357 bp Feature: domain Description: HNHc Note: nucleases Location: 12083-12224 bp Feature: domain Description: HNHc Note: nucleases Location: 12083 -12224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), PRK05580 (primosome assembly protein PriA; Validated), PRK14597 (peptide deformylase; Provisional)

Seq: LJHH01000090.1 Epulopiscium sp. SCG-C06WGA-EpuloA1 SCGC06WGA_35, whole genome shotgun sequence (8300 bp)
Overview 1 RT 1: 94-5806 bp Neighborhood of RT #1 [94, 5814] RVT-GII HNHc pcrA Lig Feature: gene Location: 94-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 30-1132 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-1816 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-1816 bp Feature: gene Location: 2025-3575 bp Feature: domain Description: pcrA Location: 2037-3543 bp Feature: domain Description: pcrA Location: 2037-354 3 bp Feature: gene Location: 3868-5814 bp Feature: domain Description: Lig Location: 3874-5806 bp Feature: domain Description: Lig Location: 3874 -5806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), Lig (COG0272), RVT-GII, HNHc (smart00507)