myRT

myRT report for GCA_001983535.1_ASM198353v1

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Seq: LJHC01000142.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_96, whole genome shotgun sequence (5473 bp)
Overview 1 RT 1: 172-5278 bp Neighborhood of RT #1 [172, 5278] DUF4372 DDE_Tnp_1 RVT-GII GIIM RVT-GII Feature: gene Location: 172-957 bp Ori: ONI37840.1 Feature: domain Description: DUF4372 Location: 178-283 bp Feature: domain Description: DUF4372 Location: 1 78-283 bp Feature: domain Description: DDE_Tnp_1 Location: 442-955 bp Feature: domain Description: DDE_Tnp_1 Location: 442-955 bp Feature: gene Location: 1363-2097 bp Ori: ONI37841.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 372-1 690 bp Feature: domain Description: GIIM Note: maturase Location: 1756-1987 bp Feature: domain Description: GIIM Note: maturase Location: 1 756-1 987 bp Feature: gene Location: 2242-2454 bp Ori: ONI37842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251 -2431 bp Feature: gene Location: 3494-5278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: LJHC01000101.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_59, whole genome shotgun sequence (31194 bp)
Overview 1 RT 1: 5049-14203 bp Neighborhood of RT #1 [5049, 14203] CitM dnaE RVT-GII HNHc fmt Feature: gene Location: 5049-6356 bp Ori: ONI39585.1 Feature: domain Description: CitM Location: 5058-6354 bp Feature: domain Description: CitM Location: 5058-6354 bp Feature: gene Location: 6622-9756 bp Ori: ONI39586.1 Feature: domain Description: dnaE Location: 6649-9718 bp Feature: domain Description: dnaE Location: 6649-9718 bp Feature: gene Location: 10481-12343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10793-11513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10793-11513 bp Feature: domain Description: HNHc Note: nucleases Location: 12056-12197 bp Feature: domain Description: HNHc Note: nucleases Location: 12 056-12 197 bp Feature: gene Location: 12468-13403 bp Ori: ONI39602.1 Feature: domain Description: fmt Location: 12471-13395 bp Feature: domain Description: fmt Location: 12 471-13395 bp Feature: gene Location: 13673-14203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitM (COG2851), dnaE (PRK07374), RVT-GII, HNHc (smart00507), fmt (TIGR00460)

Seq: LJHC01000069.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_3, whole genome shotgun sequence (144277 bp)
Overview 1 RT 1: 103622-111419 bp Neighborhood of RT #1 [103622, 111427] PHP_HisPPase_Ycdx_like pcrA RVT-GII HNHc pcrA Lig Feature: gene Location: 103622-104344 bp Ori: ONI41351.1 Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 103634-104330 bp Feature: domain Description: PHP_HisPPase_Ycdx_like Location: 103 63 4-1043 3 0 bp Feature: gene Location: 104355-105050 bp Ori: ONI41352.1 Feature: domain Description: pcrA Location: 104358-105018 bp Feature: domain Description: pcrA Location: 1043 58-105018 bp Feature: gene Location: 105758-107599 bp Ori: ONI41353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106094-106796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106094-106796 bp Feature: domain Description: HNHc Note: nucleases Location: 107381-107480 bp Feature: domain Description: HNHc Note: nucleases Location: 1073 81-107480 bp Feature: gene Location: 107689-109239 bp Ori: ONI41354.1 Feature: domain Description: pcrA Location: 107701-109222 bp Feature: domain Description: pcrA Location: 107701-109222 bp Feature: gene Location: 109481-111427 bp Ori: ONI41385.1 Feature: domain Description: Lig Location: 109487-111419 bp Feature: domain Description: Lig Location: 109487-111419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHP_HisPPase_Ycdx_like (cd07437), pcrA (TIGR01073), RVT-GII, HNHc (smart00507), Lig (COG0272)

Seq: LJHC01000143.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_97, whole genome shotgun sequence (124872 bp)
Overview 1 RT 1: 119759-123711 bp Neighborhood of RT #1 [119759, 124849] PRK05580 PRK05580 PRK14597 RVT-GII Feature: gene Location: 119759-121771 bp Ori: ONI37820.1 Feature: domain Description: PRK05580 Location: 119792-120113 bp Feature: domain Description: PRK05580 Location: 119792-120113 bp Feature: domain Description: PRK05580 Location: 120134-121766 bp Feature: domain Description: PRK05580 Location: 120134 -121766 bp Feature: gene Location: 121785-122270 bp Ori: ONI37821.1 Feature: domain Description: PRK14597 Location: 121800-122232 bp Feature: domain Description: PRK14 597 Location: 121800-122232 bp Feature: gene Location: 122994-124849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123306-123711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123306-123711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05580 (primosome assembly protein PriA; Validated), PRK14597 (peptide deformylase; Provisional), RVT-GII

Seq: LJHC01000145.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_99, whole genome shotgun sequence (77255 bp)
Overview 1 RT 1: 38283-49319 bp Neighborhood of RT #1 [38283, 49333] rpoB rpoB PRK00566 RVT-GII PRK00566 lanti_perm_MutG Feature: gene Location: 38283-42185 bp Ori: ONI37628.1 Feature: domain Description: rpoB Location: 38316-38934 bp Feature: domain Description: rpoB Location: 38316-38934 bp Feature: domain Description: rpoB Location: 38937-41937 bp Feature: domain Description: rpoB Location: 38937-41937 bp Feature: gene Location: 42228-43586 bp Feature: domain Description: PRK00566 Location: 42246-43587 bp Feature: domain Description: PRK005 66 Location: 42246-435 87 bp Feature: gene Location: 44455-46246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44713-45403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44713-45 403 bp Feature: gene Location: 46353-48539 bp Feature: domain Description: PRK00566 Location: 46356-48531 bp Feature: domain Description: PRK005 66 Location: 4635 6-485 31 bp Feature: gene Location: 48599-49333 bp Ori: ONI37607.1 Feature: domain Description: lanti_perm_MutG Location: 48614-49319 bp Feature: domain Description: lanti_perm_MutG Location: 48614-49319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, lanti_perm_MutG (TIGR03733)

Seq: LJHC01000091.1 Epulopiscium sp. SCG-B05WGA-EpuloA1 SCGB05WGA_5, whole genome shotgun sequence (55982 bp)
Overview 1 RT 1: 17-3274 bp Neighborhood of RT #1 [17, 3279] RVT-GII HNHc UgpA UgpE Feature: gene Location: 17-1885 bp Ori: ONI39988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-1055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329-1055 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1736 bp Feature: domain Description: HNHc Note: nucleases Location: 1595-1736 bp Feature: gene Location: 1975-2457 bp Feature: domain Description: UgpA Location: 1978-2449 bp Feature: domain Description: UgpA Location: 1978-2449 bp Feature: gene Location: 2461-3279 bp Ori: ONI39942.1 Feature: domain Description: UgpE Location: 2476-3274 bp Feature: domain Description: UgpE Location: 2476 -3274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), UgpA (COG1175), UgpE (COG0395)