myRT

myRT report for GCA_001983555.1_ASM198355v1

Download annotations/find similar RTs

Seq: LJHE01000041.1 Epulopiscium sp. SCG-C07WGA-EpuloA2 SCGC07WGA_46, whole genome shotgun sequence (11018 bp)
Overview 1 RT 1: 1-9654 bp Neighborhood of RT #1 [1, 9654] RVT-UNC GIY-YIG_PLEs RVT-UNC GIY-YIG_PLEs Feature: gene Location: 1-208 bp Feature: gene Location: 225-2471 bp Ori: ONI45080.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1140-1527 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 1 40-1 527 bp Feature: domain Description: GIY-YIG_PLEs Location: 2187-2457 bp Feature: domain Description: GIY-YIG_PLEs Location: 21 87-2457 bp Feature: gene Location: 2438-4213 bp Feature: gene Location: 5434-5649 bp Feature: gene Location: 5666-7912 bp Ori: ONI45083.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 6581-6968 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 6581 -6968 bp Feature: domain Description: GIY-YIG_PLEs Location: 7628-7898 bp Feature: domain Description: GIY-YIG_PLEs Location: 7628-7898 bp Feature: gene Location: 7879-9654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG26/RVT-UG4/RVT-UG17(RVT-UNC), GIY-YIG_PLEs (cd10442)

Seq: LJHE01000072.1 Epulopiscium sp. SCG-C07WGA-EpuloA2 SCGC07WGA_74, whole genome shotgun sequence (37446 bp)
Overview 1 RT 1: 8257-17245 bp Neighborhood of RT #1 [8257, 17259] FtsA Ubl_MoaD_like S4 ThiS PRK00529 RVT-GII HNHc PRK09263 rpsA Feature: gene Location: 8257-10254 bp Ori: ONI44093.1 Feature: domain Description: FtsA Location: 8272-9412 bp Feature: domain Description: FtsA Location: 82 72 -9412 bp Feature: domain Description: Ubl_MoaD_like Location: 9622-9706 bp Feature: domain Description: Ubl_MoaD_like Location: 962 2 -9706 bp Feature: domain Description: S4 Location: 9919-9991 bp Feature: domain Description: S4 Location: 9919-9991 bp Feature: domain Description: ThiS Location: 10159-10243 bp Feature: domain Description: ThiS Location: 10159-102 43 bp Feature: gene Location: 10323-10880 bp Ori: ONI44094.1 Feature: domain Description: PRK00529 Location: 10326-10878 bp Feature: domain Description: PRK0052 9 Location: 1032 6-10878 bp Feature: gene Location: 11297-13183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11612-12356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11612 -12 356 bp Feature: domain Description: HNHc Note: nucleases Location: 12926-13058 bp Feature: domain Description: HNHc Note: nucleases Location: 12 92 6-13058 bp Feature: gene Location: 13911-15842 bp Feature: domain Description: PRK09263 Location: 13917-15840 bp Feature: domain Description: PRK092 63 Location: 13917-15840 bp Feature: gene Location: 16141-17259 bp Ori: ONI44095.1 Feature: domain Description: rpsA Location: 16180-17245 bp Feature: domain Description: rpsA Location: 16180-172 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsA (smart00842), Ubl_MoaD_like (cd17040), S4 (smart00363), ThiS (pfam02597), PRK00529 (elongation factor P; Validated), RVT-GII, HNHc (smart00507), PRK09263 (anaerobic ribonucleoside triphosphate reductase; Provisional), rpsA (TIGR00717)