myRT

myRT report for GCA_001984155.1_ASM198415v1

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Seq: MTQO01000054.1 Actinosynnema sp. ALI-1.44 Contig58, whole genome shotgun sequence (1312337 bp)
Overview 1 RT 1: 1239147-1242379 bp 2 RT 2: 1257525-1262544 bp Neighborhood of RT #1 [1239147, 1242379] QueC RVT-CRISPR-like YfmG Neighborhood of RT #2 [1257525, 1262544] YigB RVT-GII GIIM HTH_31 Feature: gene Location: 1239147-1239632 bp Feature: gene Location: 1239635-1240339 bp Ori: ONI71159.1 Feature: domain Description: QueC Location: 1239671-1240331 bp Feature: domain Description: QueC Location: 1 239671 -1 240331 bp Feature: gene Location: 1240554-1241333 bp Ori: ONI71160.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1240755-1241295 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 240755-1 241 295 bp Feature: gene Location: 1241337-1241894 bp Ori: ONI71161.1 Feature: domain Description: YfmG Location: 1241484-1241889 bp Feature: domain Description: YfmG Location: 1 241 484-1 241 889 bp Feature: gene Location: 1241891-1242379 bp Feature: gene Location: 1257525-1258169 bp Ori: ONI71175.1 Feature: domain Description: YigB Location: 1257528-1258158 bp Feature: domain Description: YigB Location: 1 257528-1 2581 58 bp Feature: gene Location: 1258181-1258819 bp Feature: gene Location: 1258978-1260405 bp Ori: ONI71367.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1259299-1259983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 259299-1 259983 bp Feature: domain Description: GIIM Note: maturase Location: 1260058-1260274 bp Feature: domain Description: GIIM Note: maturase Location: 1 260058-1 260274 bp Feature: gene Location: 1260940-1261623 bp Ori: ONI71177.1 Feature: domain Description: HTH_31 Location: 1260967-1261138 bp Feature: domain Description: HTH_31 Location: 1 260967-1 261 1 38 bp Feature: gene Location: 1261924-1262544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueC (pfam06508), RVT-CRISPR, YfmG (COG1262), YigB (COG1011), RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560)