myRT

myRT report for GCA_001984175.1_ASM198417v1

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Seq: MTQP01000025.1 Saccharothrix sp. ALI-22-I Contig29, whole genome shotgun sequence (28690 bp)
Overview 1 RT 1: 2-3649 bp Neighborhood of RT #1 [2, 3649] HTH_32 HTH_Tnp_Tc3_2 rve_3 RVT-GII GIIM rve_3 Feature: gene Location: 2-511 bp Feature: domain Description: HTH_32 Location: 125-320 bp Feature: domain Description: HTH_32 Location: 1 25-320 bp Feature: gene Location: 577-1659 bp Ori: ONI92833.1 Feature: domain Description: HTH_Tnp_Tc3_2 Location: 922-1048 bp Feature: domain Description: HTH_Tnp_Tc3_2 Location: 922-1 048 bp Feature: domain Description: rve_3 Location: 1378-1555 bp Feature: domain Description: rve_3 Location: 1 378-1 555 bp Feature: gene Location: 1794-2750 bp Ori: ONI92852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1824-2322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 824-2322 bp Feature: domain Description: GIIM Note: maturase Location: 2391-2625 bp Feature: domain Description: GIIM Note: maturase Location: 2391 -2625 bp Feature: gene Location: 2811-3404 bp Feature: domain Description: rve_3 Location: 3114-3309 bp Feature: domain Description: rve_3 Location: 31 1 4-3309 bp Feature: gene Location: 3401-3649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), HTH_Tnp_Tc3_2 (pfam01498), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)

Seq: MTQP01000060.1 Saccharothrix sp. ALI-22-I Contig64, whole genome shotgun sequence (269055 bp)
Overview 1 RT 1: 265517-268462 bp Neighborhood of RT #1 [265517, 268548] Methyltransf_25 PRK08317 Peptidase_S66_mccF_like RVT-GII GIIM Feature: gene Location: 265517-265975 bp Feature: domain Description: Methyltransf_25 Location: 265577-265835 bp Feature: domain Description: Methyltransf_2 5 Location: 2 65577-2 65835 bp Feature: domain Description: PRK08317 Location: 265886-265967 bp Feature: domain Description: PRK08317 Location: 2 65886-2 65967 bp Feature: gene Location: 266138-267127 bp Ori: ONI88166.1 Feature: domain Description: Peptidase_S66_mccF_like Location: 266180-267068 bp Feature: domain Description: Peptidase_S66_mccF_like Location: 2 66180-2 67068 bp Feature: gene Location: 267295-268548 bp Ori: ONI88148.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267511-268171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 67511-2 68171 bp Feature: domain Description: GIIM Note: maturase Location: 268249-268462 bp Feature: domain Description: GIIM Note: maturase Location: 2 682 49-2 68462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_25 (pfam13649), PRK08317 (hypothetical protein; Provisional), Peptidase_S66_mccF_like (cd07062), RVT-GII, GIIM (pfam08388)

Seq: MTQP01000040.1 Saccharothrix sp. ALI-22-I Contig44, whole genome shotgun sequence (94629 bp)
Overview 1 RT 1: 31136-35903 bp 2 RT 2: 70049-75509 bp Neighborhood of RT #1 [31136, 35953] AcrR UbiH RVT-GII VanZ Neighborhood of RT #2 [70049, 75541] dnaE2 HTH_32 rve_3 RVT-GII GIIM HTH_28 HTH_33 Feature: gene Location: 31136-31822 bp Ori: ONI92189.1 Feature: domain Description: AcrR Location: 31214-31745 bp Feature: domain Description: AcrR Location: 3 1214-3 1745 bp Feature: gene Location: 31925-33127 bp Ori: ONI92190.1 Feature: domain Description: UbiH Location: 31955-33056 bp Feature: domain Description: UbiH Location: 3 1955-3 3 056 bp Feature: gene Location: 32857-34341 bp Ori: ONI92191.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33067-33727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 067-3 3 727 bp Feature: gene Location: 34618-34854 bp Feature: gene Location: 35279-35953 bp Ori: ONI92192.1 Feature: domain Description: VanZ Location: 35585-35903 bp Feature: domain Description: VanZ Location: 3 5585-3 5903 bp Feature: gene Location: 70049-70525 bp Ori: ONI92221.1 Feature: domain Description: dnaE2 Location: 70076-70418 bp Feature: domain Description: dnaE2 Location: 70076-70418 bp Feature: gene Location: 70584-71654 bp Ori: ONI92222.1 Feature: domain Description: HTH_32 Location: 70821-71022 bp Feature: domain Description: HTH_3 2 Location: 70821-71022 bp Feature: domain Description: rve_3 Location: 71361-71556 bp Feature: domain Description: rve_3 Location: 713 61-71556 bp Feature: gene Location: 71896-73149 bp Ori: ONI92223.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72112-72763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72112-72763 bp Feature: domain Description: GIIM Note: maturase Location: 72853-73081 bp Feature: domain Description: GIIM Note: maturase Location: 72853 -73 081 bp Feature: gene Location: 73891-74616 bp Feature: gene Location: 75035-75541 bp Ori: ONI92224.1 Feature: domain Description: HTH_28 Location: 75092-75248 bp Feature: domain Description: HTH_28 Location: 75092-75248 bp Feature: domain Description: HTH_33 Location: 75338-75509 bp Feature: domain Description: HTH_3 3 Location: 753 3 8-75509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), UbiH (TIGR01984), RVT-GII, VanZ (pfam04892), dnaE2 (PRK05672), HTH_32 (pfam13565), rve_3 (pfam13683), GIIM (pfam08388), HTH_28 (pfam13518), HTH_33 (pfam13592)

Seq: MTQP01000016.1 Saccharothrix sp. ALI-22-I Contig20, whole genome shotgun sequence (16195 bp)
Overview 1 RT 1: 5980-10278 bp Neighborhood of RT #1 [5980, 10424] RicinB_lectin_2 group_II_RT_mat RVT-GII Inhibitor_I9 Peptidases_S8_PCSK9_ProteinaseK_like VCBS VCBS Tra5 Feature: gene Location: 5980-6399 bp Ori: ONI93014.1 Feature: domain Description: RicinB_lectin_2 Location: 6034-6202 bp Feature: domain Description: RicinB_lectin_2 Location: 6034 -6202 bp Feature: gene Location: 6474-6878 bp Feature: gene Location: 7110-7478 bp Ori: ONI93016.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 7179-7311 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7179-7311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7311-7467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7311-74 67 bp Feature: gene Location: 7583-9460 bp Ori: ONI93017.1 Feature: domain Description: Inhibitor_I9 Location: 7694-7829 bp Feature: domain Description: Inhibitor_I9 Location: 7694 -7829 bp Feature: domain Description: Peptidases_S8_PCSK9_ProteinaseK_like Location: 7859-8606 bp Feature: domain Description: Peptidases_S8_PCSK9_ProteinaseK_like Location: 7859-8606 bp Feature: domain Description: VCBS Location: 8678-8861 bp Feature: domain Description: VCBS Location: 8678-8861 bp Feature: domain Description: VCBS Location: 9002-9203 bp Feature: domain Description: VCBS Location: 9002-9203 bp Feature: gene Location: 9489-10424 bp Ori: ONI93018.1 Feature: domain Description: Tra5 Location: 9675-10278 bp Feature: domain Description: Tra5 Location: 9675-10278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RicinB_lectin_2 (pfam14200), group_II_RT_mat (TIGR04416), RVT-GII, Inhibitor_I9 (pfam05922), Peptidases_S8_PCSK9_ProteinaseK_like (cd04077), VCBS (pfam13517), Tra5 (COG2801)