myRT

myRT report for GCA_001984285.1_ASM198428v1

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Seq: MUJR01000009.1 Burkholderia cenocepacia strain VC5486 VC5486_contig63, whole genome shotgun sequence (2920426 bp)
Overview 1 RT 1: 2585506-2593883 bp 2 RT 2: 2849876-2855319 bp 3 RT 3: 2866366-2871149 bp Neighborhood of RT #1 [2585506, 2594104] PRK05643 gyrB RVT-Retrons YjgR YjgR SIR2_2 Neighborhood of RT #2 [2849876, 2855321] YvlD fadh2 RVT-GII GIIM GatA DLH Neighborhood of RT #3 [2866366, 2871175] RlpA RVT-GII GIIM IS285 RsmI Feature: gene Location: 2585506-2586612 bp Feature: domain Description: PRK05643 Location: 2585518-2586610 bp Feature: domain Description: PRK05643 Location: 258551 8-258661 0 bp Feature: gene Location: 2586805-2589279 bp Feature: domain Description: gyrB Location: 2586835-2589277 bp Feature: domain Description: gyrB Location: 2586835-2589277 bp Feature: gene Location: 2589705-2591456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2589840-2590482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2589840-2590482 bp Feature: gene Location: 2591551-2593272 bp Feature: domain Description: YjgR Location: 2592034-2592298 bp Feature: domain Description: YjgR Location: 2592034-2592298 bp Feature: domain Description: YjgR Location: 2592793-2593195 bp Feature: domain Description: YjgR Location: 2592793-25931 95 bp Feature: gene Location: 2593265-2594104 bp Feature: domain Description: SIR2_2 Location: 2593439-2593883 bp Feature: domain Description: SIR2_2 Location: 2593439-2593883 bp Feature: gene Location: 2849876-2850229 bp Feature: domain Description: YvlD Location: 2849879-2850209 bp Feature: domain Description: YvlD Location: 2849879-2850209 bp Feature: gene Location: 2850260-2851090 bp Feature: domain Description: fadh2 Location: 2850278-2851082 bp Feature: domain Description: fadh2 Location: 2850278-2851 082 bp Feature: gene Location: 2851563-2852960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851896-2852514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851 896-285251 4 bp Feature: domain Description: GIIM Note: maturase Location: 2852565-2852775 bp Feature: domain Description: GIIM Note: maturase Location: 2852565-2852775 bp Feature: gene Location: 2853070-2854548 bp Feature: domain Description: GatA Location: 2853097-2854525 bp Feature: domain Description: GatA Location: 2853097-2854525 bp Feature: gene Location: 2854629-2855321 bp Feature: domain Description: DLH Location: 2854641-2855319 bp Feature: domain Description: DLH Location: 2854641 -285531 9 bp Feature: gene Location: 2866366-2866977 bp Feature: domain Description: RlpA Location: 2866438-2866942 bp Feature: domain Description: RlpA Location: 2866438-2866942 bp Feature: gene Location: 2867035-2867364 bp Feature: gene Location: 2867435-2868760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2867768-2868383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2867768-2868383 bp Feature: domain Description: GIIM Note: maturase Location: 2868443-2868644 bp Feature: domain Description: GIIM Note: maturase Location: 2868443-2868644 bp Feature: gene Location: 2868784-2870052 bp Feature: domain Description: IS285 Location: 2868868-2870038 bp Feature: domain Description: IS285 Location: 2868868-2870038 bp Feature: gene Location: 2870288-2871175 bp Feature: domain Description: RsmI Location: 2870336-2871149 bp Feature: domain Description: RsmI Location: 2870336-2871 1 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, YjgR (COG0433), SIR2_2 (pfam13289), YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154)
DLH (pfam01738), RlpA (COG0797), IS285 (COG3328), RsmI (COG0313)

Seq: MUJR01000008.1 Burkholderia cenocepacia strain VC5486 VC5486_contig61, whole genome shotgun sequence (550508 bp)
Overview 1 RT 1: 121792-125439 bp 2 RT 2: 367335-374327 bp Neighborhood of RT #1 [121792, 125439] COG1981 RVT-GII GIIM IS285 Neighborhood of RT #2 [367335, 374329] RVT-GII GIIM IS285 COG4315 Feature: gene Location: 121792-122208 bp Feature: domain Description: COG1981 Location: 121795-122206 bp Feature: domain Description: COG1981 Location: 12 1795-12 2 2 06 bp Feature: gene Location: 122294-122623 bp Feature: gene Location: 122694-123911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123027-123642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 302 7-12 3642 bp Feature: domain Description: GIIM Note: maturase Location: 123702-123897 bp Feature: domain Description: GIIM Note: maturase Location: 12 3702 -12 3897 bp Feature: gene Location: 123953-125221 bp Feature: domain Description: IS285 Location: 124037-125207 bp Feature: domain Description: IS2 85 Location: 12 4037-12 52 07 bp Feature: gene Location: 125260-125439 bp Feature: gene Location: 367335-370415 bp Feature: gene Location: 370545-370874 bp Feature: gene Location: 370945-372243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371278-371893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3712 78-371893 bp Feature: domain Description: GIIM Note: maturase Location: 371953-372154 bp Feature: domain Description: GIIM Note: maturase Location: 371953-372 154 bp Feature: gene Location: 372270-373538 bp Feature: domain Description: IS285 Location: 372354-373524 bp Feature: domain Description: IS2 85 Location: 372 354-37352 4 bp Feature: gene Location: 373970-374329 bp Feature: domain Description: COG4315 Location: 373991-374327 bp Feature: domain Description: COG4315 Location: 373991-37432 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1981 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388), IS285 (COG3328), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) )

Seq: MUJR01000005.1 Burkholderia cenocepacia strain VC5486 VC5486_contig57, whole genome shotgun sequence (935494 bp)
Overview 1 RT 1: 763109-766924 bp Neighborhood of RT #1 [763109, 766929] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 763109-763438 bp Feature: domain Description: Histone_HNS Location: 763130-763367 bp Feature: domain Description: Histone_HNS Location: 763 13 0-763 3 67 bp Feature: gene Location: 763585-763791 bp Feature: gene Location: 763764-765113 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 764229-764865 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 764229-764865 bp Feature: gene Location: 765367-765939 bp Feature: domain Description: FIN Location: 765553-765904 bp Feature: domain Description: FIN Location: 765553 -765904 bp Feature: gene Location: 766174-766929 bp Feature: domain Description: his_ut_repres Location: 766252-766924 bp Feature: domain Description: his_ut_repres Location: 766252-766924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)