myRT

myRT report for GCA_001984315.1_ASM198431v1

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Seq: MUJN01000002.1 Burkholderia cenocepacia strain VC9789 VC9789_contig30, whole genome shotgun sequence (57063 bp)
Overview 1 RT 1: 50048-54664 bp Neighborhood of RT #1 [50048, 54664] PRK14673 RsmI RVT-GII GIIM COG3547 Feature: gene Location: 50048-50524 bp Ori: ONJ29021.1 Feature: domain Description: PRK14673 Location: 50099-50516 bp Feature: domain Description: PRK1 4673 Location: 50099-5051 6 bp Feature: gene Location: 50523-51410 bp Ori: ONJ29022.1 Feature: domain Description: RsmI Location: 50571-51384 bp Feature: domain Description: RsmI Location: 50571 -51 384 bp Feature: gene Location: 51518-52885 bp Ori: ONJ29023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51851-52466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 851 -52466 bp Feature: domain Description: GIIM Note: maturase Location: 52526-52727 bp Feature: domain Description: GIIM Note: maturase Location: 52526-52727 bp Feature: gene Location: 53056-54090 bp Ori: ONJ29024.1 Feature: domain Description: COG3547 Location: 53071-54034 bp Feature: domain Description: COG3547 Location: 53071 -54034 bp Feature: gene Location: 54470-54664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUJN01000004.1 Burkholderia cenocepacia strain VC9789 VC9789_contig29, whole genome shotgun sequence (2732770 bp)
Overview 1 RT 1: 238258-244513 bp 2 RT 2: 812893-817214 bp 3 RT 3: 1201239-1208259 bp 4 RT 4: 1815493-1819882 bp Neighborhood of RT #1 [238258, 244513] PRK09054 RpiR RVT-GII GIIM COG3547 Neighborhood of RT #2 [812893, 817222] COG3547 RVT-GII GIIM COG4315 PRK12511 Neighborhood of RT #3 [1201239, 1208259] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Neighborhood of RT #4 [1815493, 1819905] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 238258-240114 bp Ori: ONJ18558.1 Feature: domain Description: PRK09054 Location: 238270-240073 bp Feature: domain Description: PRK09054 Location: 2 382 70-2 40073 bp Feature: gene Location: 240409-241257 bp Ori: ONJ18559.1 Feature: domain Description: RpiR Location: 240412-241234 bp Feature: domain Description: RpiR Location: 2 40412 -2 412 34 bp Feature: gene Location: 241367-242734 bp Ori: ONJ18560.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241700-242315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 41700-2 42 315 bp Feature: domain Description: GIIM Note: maturase Location: 242375-242576 bp Feature: domain Description: GIIM Note: maturase Location: 2 42 375-2 42 576 bp Feature: gene Location: 242905-243939 bp Ori: ONJ18561.1 Feature: domain Description: COG3547 Location: 242920-243883 bp Feature: domain Description: COG3547 Location: 2 42 92 0-2 43883 bp Feature: gene Location: 244319-244513 bp Feature: gene Location: 812893-813087 bp Feature: gene Location: 813467-814501 bp Ori: ONJ19069.1 Feature: domain Description: COG3547 Location: 813482-814445 bp Feature: domain Description: COG3547 Location: 813482 -814445 bp Feature: gene Location: 814672-816039 bp Ori: ONJ19070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815005-815620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815005-81562 0 bp Feature: domain Description: GIIM Note: maturase Location: 815680-815881 bp Feature: domain Description: GIIM Note: maturase Location: 815680-815881 bp Feature: gene Location: 816320-816679 bp Ori: ONJ19071.1 Feature: domain Description: COG4315 Location: 816341-816677 bp Feature: domain Description: COG4315 Location: 816341-816677 bp Feature: gene Location: 816707-817222 bp Ori: ONJ19072.1 Feature: domain Description: PRK12511 Location: 816719-817214 bp Feature: domain Description: PRK12 511 Location: 816719-8172 14 bp Feature: gene Location: 1201239-1201904 bp Feature: domain Description: GIIM Note: maturase Location: 1201242-1201467 bp Feature: domain Description: GIIM Note: maturase Location: 12 012 42 -12 01467 bp Feature: domain Description: HNHc Note: nucleases Location: 1201701-1201857 bp Feature: domain Description: HNHc Note: nucleases Location: 12 01701-12 01857 bp Feature: gene Location: 1202050-1204965 bp Ori: ONJ19436.1 Feature: domain Description: DUF4158 Location: 1202089-1202554 bp Feature: domain Description: DUF4158 Location: 12 02 089-12 02 554 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1203742-1204888 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 12 03742 -12 04888 bp Feature: gene Location: 1205096-1206166 bp Feature: domain Description: RVT_N Location: 1205153-1205390 bp Feature: domain Description: RVT_N Location: 12 05153-12 05390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1205441-1206092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 05441-12 06092 bp Feature: gene Location: 1206762-1207817 bp Ori: ONJ19437.1 Feature: domain Description: DEXHc_Snf Location: 1206981-1207236 bp Feature: domain Description: DEXHc_Snf Location: 12 06981-12 072 36 bp Feature: gene Location: 1207954-1208259 bp Feature: gene Location: 1815493-1815753 bp Feature: gene Location: 1815768-1817669 bp Ori: ONJ19964.1 Feature: domain Description: Dcm Location: 1815801-1816407 bp Feature: domain Description: Dcm Location: 1815801-1816407 bp Feature: domain Description: Dcm Location: 1817406-1817565 bp Feature: domain Description: Dcm Location: 1817406-1817565 bp Feature: gene Location: 1817728-1818726 bp Ori: ONJ19965.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1817821-1818508 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181782 1-1818508 bp Feature: gene Location: 1819070-1819426 bp Ori: ONJ19966.1 Feature: domain Description: Avd_like Location: 1819097-1819403 bp Feature: domain Description: Avd_like Location: 1819097-1819403 bp Feature: gene Location: 1819441-1819905 bp Ori: ONJ19967.1 Feature: domain Description: DUF1566 Location: 1819702-1819882 bp Feature: domain Description: DUF1566 Location: 1819702 -1819882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)
RVT_N (pfam13655), DEXHc_Snf (cd17919), Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUJN01000005.1 Burkholderia cenocepacia strain VC9789 VC9789_contig32, whole genome shotgun sequence (3076554 bp)
Overview 1 RT 1: 2026582-2032636 bp Neighborhood of RT #1 [2026582, 2032689] HATPase_c_3 RVT-UG5 Tra5 HTH_Tnp_1 Feature: gene Location: 2026582-2027271 bp Feature: gene Location: 2027523-2029538 bp Ori: ONJ17193.1 Feature: domain Description: HATPase_c_3 Location: 2027592-2027916 bp Feature: domain Description: HATPase_c_3 Location: 2027592-2027916 bp Feature: gene Location: 2030066-2031520 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2030075-2030549 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 203 0075-203 0549 bp Feature: gene Location: 2031569-2032402 bp Ori: ONJ17194.1 Feature: domain Description: Tra5 Location: 2031590-2032370 bp Feature: domain Description: Tra5 Location: 203 1590-203 23 70 bp Feature: gene Location: 2032426-2032689 bp Ori: ONJ17195.1 Feature: domain Description: HTH_Tnp_1 Location: 2032432-2032636 bp Feature: domain Description: HTH_Tnp_1 Location: 203 243 2-203 263 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: MUJN01000006.1 Burkholderia cenocepacia strain VC9789 VC9789_contig31, whole genome shotgun sequence (985251 bp)
Overview 1 RT 1: 170103-173852 bp Neighborhood of RT #1 [170103, 173923] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 170103-170858 bp Ori: ONJ10788.1 Feature: domain Description: his_ut_repres Location: 170181-170853 bp Feature: domain Description: his_ut_repres Location: 170181-170853 bp Feature: gene Location: 171093-171665 bp Ori: ONJ10789.1 Feature: domain Description: FIN Location: 171279-171630 bp Feature: domain Description: FIN Location: 171279-171630 bp Feature: gene Location: 171919-173268 bp Ori: ONJ10790.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172384-173020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172384 -173020 bp Feature: gene Location: 173241-173447 bp Feature: gene Location: 173594-173923 bp Ori: ONJ10792.1 Feature: domain Description: Histone_HNS Location: 173615-173852 bp Feature: domain Description: Histone_HNS Location: 173615-173852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)