myRT

myRT report for GCA_001984355.1_ASM198435v1

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Seq: MUJS01000004.1 Burkholderia cenocepacia strain VC3917 VC3917_contig168, whole genome shotgun sequence (3197438 bp)
Overview 1 RT 1: 845331-853322 bp 2 RT 2: 1580571-1586794 bp 3 RT 3: 2776547-2784338 bp Neighborhood of RT #1 [845331, 853510] HATPase_c_3 RVT-UG5 IS285 HTH_29 rve Neighborhood of RT #2 [1580571, 1586934] GT4_GT28_WabH-like RVT-GII GIIM MauG AcpA Neighborhood of RT #3 [2776547, 2784379] MFS_SV2_like MscK RVT-GII GIIM ALDH_F7_AASADH Feature: gene Location: 845331-846020 bp Feature: gene Location: 846272-848287 bp Ori: ONJ00732.1 Feature: domain Description: HATPase_c_3 Location: 846341-846665 bp Feature: domain Description: HATPase_c_3 Location: 846341 -846665 bp Feature: gene Location: 848353-851346 bp Ori: ONJ02707.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 848824-849298 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 848824-849298 bp Feature: gene Location: 851531-852427 bp Feature: domain Description: IS285 Location: 851585-852380 bp Feature: domain Description: IS285 Location: 851 585-852380 bp Feature: gene Location: 852473-853510 bp Ori: ONJ00733.1 Feature: domain Description: HTH_29 Location: 852512-852692 bp Feature: domain Description: HTH_29 Location: 85251 2-852692 bp Feature: domain Description: rve Location: 852959-853322 bp Feature: domain Description: rve Location: 852959-853322 bp Feature: gene Location: 1580571-1581839 bp Ori: ONJ01331.1 Feature: domain Description: GT4_GT28_WabH-like Location: 1580616-1581708 bp Feature: domain Description: GT4_GT28_WabH-like Location: 1 58061 6-1 581 708 bp Feature: gene Location: 1581894-1582223 bp Feature: gene Location: 1582294-1583661 bp Ori: ONJ01332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582627-1583242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 582627-1 583242 bp Feature: domain Description: GIIM Note: maturase Location: 1583302-1583503 bp Feature: domain Description: GIIM Note: maturase Location: 1 583302-1 583503 bp Feature: gene Location: 1583747-1585165 bp Ori: ONJ01333.1 Feature: domain Description: MauG Location: 1583915-1585112 bp Feature: domain Description: MauG Location: 1 58391 5-1 5851 1 2 bp Feature: gene Location: 1585261-1586934 bp Ori: ONJ01334.1 Feature: domain Description: AcpA Location: 1585390-1586794 bp Feature: domain Description: AcpA Location: 1 585390-1 586794 bp Feature: gene Location: 2776547-2777965 bp Ori: ONJ02315.1 Feature: domain Description: MFS_SV2_like Location: 2776667-2777918 bp Feature: domain Description: MFS_SV2_like Location: 2776667-277791 8 bp Feature: gene Location: 2778413-2780875 bp Ori: ONJ02316.1 Feature: domain Description: MscK Location: 2778491-2780834 bp Feature: domain Description: MscK Location: 2778491 -2780834 bp Feature: gene Location: 2781019-2782386 bp Ori: ONJ02317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781352-2781967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2781 352-2781 967 bp Feature: domain Description: GIIM Note: maturase Location: 2782027-2782228 bp Feature: domain Description: GIIM Note: maturase Location: 2782027-2782228 bp Feature: gene Location: 2782457-2782786 bp Feature: gene Location: 2782868-2784379 bp Ori: ONJ02319.1 Feature: domain Description: ALDH_F7_AASADH Location: 2782922-2784338 bp Feature: domain Description: ALDH_F7_AASADH Location: 2782922-2784338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328), HTH_29 (pfam13551), rve (pfam00665), GT4_GT28_WabH-like (cd03811), RVT-GII, GIIM (pfam08388), MauG (COG1858), AcpA (cd16013)
MFS_SV2_like (cd17316), MscK (COG3264), ALDH_F7_AASADH (cd07130)

Seq: MUJS01000005.1 Burkholderia cenocepacia strain VC3917 VC3917_contig227, whole genome shotgun sequence (2494342 bp)
Overview 1 RT 1: 381673-386255 bp 2 RT 2: 621946-628938 bp Neighborhood of RT #1 [381673, 386278] COG1981 RVT-GII GIIM IS285 RpiR Neighborhood of RT #2 [621946, 628940] RVT-GII GIIM IS285 COG4315 Feature: gene Location: 381673-382089 bp Ori: ONI93526.1 Feature: domain Description: COG1981 Location: 381676-382087 bp Feature: domain Description: COG1981 Location: 381676-382 087 bp Feature: gene Location: 382175-382504 bp Feature: gene Location: 382575-383918 bp Ori: ONI93527.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382908-383523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 908-38352 3 bp Feature: domain Description: GIIM Note: maturase Location: 383583-383784 bp Feature: domain Description: GIIM Note: maturase Location: 383583-383784 bp Feature: gene Location: 383942-385210 bp Ori: ONI93528.1 Feature: domain Description: IS285 Location: 384026-385196 bp Feature: domain Description: IS2 85 Location: 38402 6-385196 bp Feature: gene Location: 385430-386278 bp Ori: ONI93529.1 Feature: domain Description: RpiR Location: 385433-386255 bp Feature: domain Description: RpiR Location: 385433-3862 55 bp Feature: gene Location: 621946-625026 bp Feature: gene Location: 625156-625485 bp Feature: gene Location: 625556-626854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 625889-626504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 5889-62 6504 bp Feature: domain Description: GIIM Note: maturase Location: 626564-626765 bp Feature: domain Description: GIIM Note: maturase Location: 62 6564-62 6765 bp Feature: gene Location: 626881-628149 bp Ori: ONI93727.1 Feature: domain Description: IS285 Location: 626965-628135 bp Feature: domain Description: IS2 85 Location: 62 6965-62 8135 bp Feature: gene Location: 628581-628940 bp Ori: ONI95371.1 Feature: domain Description: COG4315 Location: 628602-628938 bp Feature: domain Description: COG4315 Location: 62 8602 -62 8938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1981 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388), IS285 (COG3328), RpiR (COG1737), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) )

Seq: MUJS01000003.1 Burkholderia cenocepacia strain VC3917 VC3917_contig226, whole genome shotgun sequence (1378128 bp)
Overview 1 RT 1: 49072-52943 bp 2 RT 2: 62688-68113 bp 3 RT 3: 322285-330881 bp Neighborhood of RT #1 [49072, 52978] PRK14673 RsmI RVT-GII GIIM RlpA Neighborhood of RT #2 [62688, 68133] DLH GatA RVT-GII GIIM fadh2 YvlD Neighborhood of RT #3 [322285, 330883] SIR2_2 YjgR YjgR RVT-Retrons gyrB PRK05643 Feature: gene Location: 49072-49548 bp Ori: ONJ05313.1 Feature: domain Description: PRK14673 Location: 49123-49540 bp Feature: domain Description: PRK14673 Location: 49123 -49540 bp Feature: gene Location: 49547-50434 bp Ori: ONJ05314.1 Feature: domain Description: RsmI Location: 49595-50408 bp Feature: domain Description: RsmI Location: 49595-50408 bp Feature: gene Location: 50542-51909 bp Ori: ONJ05315.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50875-51490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50875-51490 bp Feature: domain Description: GIIM Note: maturase Location: 51550-51751 bp Feature: domain Description: GIIM Note: maturase Location: 51550-51751 bp Feature: gene Location: 51980-52309 bp Feature: gene Location: 52367-52978 bp Ori: ONJ05317.1 Feature: domain Description: RlpA Location: 52439-52943 bp Feature: domain Description: RlpA Location: 5243 9-52943 bp Feature: gene Location: 62688-63380 bp Ori: ONJ05326.1 Feature: domain Description: DLH Location: 62700-63378 bp Feature: domain Description: DLH Location: 62700-63 3 78 bp Feature: gene Location: 63461-64939 bp Ori: ONJ06495.1 Feature: domain Description: GatA Location: 63488-64916 bp Feature: domain Description: GatA Location: 63 488-64916 bp Feature: gene Location: 65049-66446 bp Ori: ONJ05327.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65382-66000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653 82-66000 bp Feature: domain Description: GIIM Note: maturase Location: 66051-66261 bp Feature: domain Description: GIIM Note: maturase Location: 66051-66261 bp Feature: gene Location: 66919-67749 bp Ori: ONJ05328.1 Feature: domain Description: fadh2 Location: 66937-67741 bp Feature: domain Description: fadh2 Location: 6693 7-67741 bp Feature: gene Location: 67780-68133 bp Ori: ONJ05329.1 Feature: domain Description: YvlD Location: 67783-68113 bp Feature: domain Description: YvlD Location: 67783 -68113 bp Feature: gene Location: 322285-323124 bp Ori: ONJ05538.1 Feature: domain Description: SIR2_2 Location: 322459-322903 bp Feature: domain Description: SIR2_2 Location: 3 22459-3 22903 bp Feature: gene Location: 323117-324838 bp Ori: ONJ05539.1 Feature: domain Description: YjgR Location: 323600-323864 bp Feature: domain Description: YjgR Location: 3 23 600-3 23 864 bp Feature: domain Description: YjgR Location: 324359-324761 bp Feature: domain Description: YjgR Location: 3 243 59-3 24761 bp Feature: gene Location: 324933-326684 bp Ori: ONJ05540.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325068-325710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 25068-3 25710 bp Feature: gene Location: 327110-329584 bp Ori: ONJ05541.1 Feature: domain Description: gyrB Location: 327140-329582 bp Feature: domain Description: gyrB Location: 3 27140-3 29582 bp Feature: gene Location: 329777-330883 bp Ori: ONJ05542.1 Feature: domain Description: PRK05643 Location: 329789-330881 bp Feature: domain Description: PRK05643 Location: 3 29789-3 3 0881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), RlpA (COG0797), DLH (pfam01738), GatA (COG0154), fadh2 (TIGR00676), YvlD (COG1950), SIR2_2 (pfam13289)
YjgR (COG0433), RVT-Retrons, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated)