myRT

myRT report for GCA_001984375.1_ASM198437v1

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Seq: MUJQ01000004.1 Burkholderia cenocepacia strain VC1255 VC1255_contig173.212.195, whole genome shotgun sequence (1007248 bp)
Overview 1 RT 1: 169290-173039 bp Neighborhood of RT #1 [169290, 173110] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 169290-170045 bp Ori: ONJ14745.1 Feature: domain Description: his_ut_repres Location: 169368-170040 bp Feature: domain Description: his_ut_repres Location: 1 69368-1 70040 bp Feature: gene Location: 170280-170852 bp Ori: ONJ14746.1 Feature: domain Description: FIN Location: 170466-170817 bp Feature: domain Description: FIN Location: 1 70466-1 7081 7 bp Feature: gene Location: 171106-172455 bp Ori: ONJ14747.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 171571-172207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 571 -1 72207 bp Feature: gene Location: 172428-172634 bp Feature: gene Location: 172781-173110 bp Ori: ONJ14749.1 Feature: domain Description: Histone_HNS Location: 172802-173039 bp Feature: domain Description: Histone_HNS Location: 1 72802-1 73039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUJQ01000015.1 Burkholderia cenocepacia strain VC1255 VC1255_contig227.226.225, whole genome shotgun sequence (3188294 bp)
Overview 1 RT 1: 840910-848901 bp Neighborhood of RT #1 [840910, 849089] HATPase_c_3 RVT-UG5 IS285 HTH_29 rve Feature: gene Location: 840910-841599 bp Feature: gene Location: 841851-843866 bp Ori: ONI96213.1 Feature: domain Description: HATPase_c_3 Location: 841920-842244 bp Feature: domain Description: HATPase_c_3 Location: 84192 0-842 2 44 bp Feature: gene Location: 843932-846925 bp Ori: ONI98183.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 844403-844877 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 844403-844877 bp Feature: gene Location: 847110-848006 bp Feature: domain Description: IS285 Location: 847164-847959 bp Feature: domain Description: IS2 85 Location: 847164-847959 bp Feature: gene Location: 848052-849089 bp Ori: ONI96214.1 Feature: domain Description: HTH_29 Location: 848091-848271 bp Feature: domain Description: HTH_2 9 Location: 848091-8482 71 bp Feature: domain Description: rve Location: 848538-848901 bp Feature: domain Description: rve Location: 848538-848901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, IS285 (COG3328), HTH_29 (pfam13551), rve (pfam00665)

Seq: MUJQ01000009.1 Burkholderia cenocepacia strain VC1255 VC1255_contig221.222.229.228, whole genome shotgun sequence (2762452 bp)
Overview 1 RT 1: 2168048-2175263 bp 2 RT 2: 2433005-2438448 bp 3 RT 3: 2448160-2452058 bp Neighborhood of RT #1 [2168048, 2175292] PRK05643 gyrB RVT-Retrons COG4584 PRK09183 Neighborhood of RT #2 [2433005, 2438450] YvlD fadh2 RVT-GII GIIM GatA DLH Neighborhood of RT #3 [2448160, 2452066] RlpA RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2168048-2169154 bp Ori: ONJ08785.1 Feature: domain Description: PRK05643 Location: 2168060-2169152 bp Feature: domain Description: PRK05643 Location: 2168060-2169152 bp Feature: gene Location: 2169347-2171821 bp Ori: ONJ08786.1 Feature: domain Description: gyrB Location: 2169377-2171819 bp Feature: domain Description: gyrB Location: 21693 77-2171819 bp Feature: gene Location: 2172379-2173041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2172382-2173024 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21723 82-2173 024 bp Feature: gene Location: 2173488-2174510 bp Ori: ONJ08787.1 Feature: domain Description: COG4584 Location: 2173491-2174349 bp Feature: domain Description: COG4584 Location: 2173 491-21743 49 bp Feature: gene Location: 2174507-2175292 bp Ori: ONJ08788.1 Feature: domain Description: PRK09183 Location: 2174510-2175263 bp Feature: domain Description: PRK09183 Location: 2174510-2175263 bp Feature: gene Location: 2433005-2433358 bp Ori: ONJ08998.1 Feature: domain Description: YvlD Location: 2433008-2433338 bp Feature: domain Description: YvlD Location: 243 3 008-243 3 3 3 8 bp Feature: gene Location: 2433389-2434219 bp Ori: ONJ08999.1 Feature: domain Description: fadh2 Location: 2433407-2434211 bp Feature: domain Description: fadh2 Location: 243 3 407-243 4211 bp Feature: gene Location: 2434692-2436089 bp Ori: ONJ09000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2435025-2435643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 5025-243 5643 bp Feature: domain Description: GIIM Note: maturase Location: 2435694-2435904 bp Feature: domain Description: GIIM Note: maturase Location: 243 5694-243 5904 bp Feature: gene Location: 2436199-2437677 bp Ori: ONJ09405.1 Feature: domain Description: GatA Location: 2436226-2437654 bp Feature: domain Description: GatA Location: 243 6226-243 7654 bp Feature: gene Location: 2437758-2438450 bp Ori: ONJ09001.1 Feature: domain Description: DLH Location: 2437770-2438448 bp Feature: domain Description: DLH Location: 243 7770-243 8448 bp Feature: gene Location: 2448160-2448771 bp Ori: ONJ09010.1 Feature: domain Description: RlpA Location: 2448232-2448736 bp Feature: domain Description: RlpA Location: 244823 2-244873 6 bp Feature: gene Location: 2448829-2449158 bp Feature: gene Location: 2449229-2450596 bp Ori: ONJ09012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449562-2450177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2449562-2450177 bp Feature: domain Description: GIIM Note: maturase Location: 2450237-2450438 bp Feature: domain Description: GIIM Note: maturase Location: 245023 7-245043 8 bp Feature: gene Location: 2450704-2451591 bp Ori: ONJ09013.1 Feature: domain Description: RsmI Location: 2450752-2451565 bp Feature: domain Description: RsmI Location: 2450752-2451565 bp Feature: gene Location: 2451590-2452066 bp Ori: ONJ09014.1 Feature: domain Description: PRK14673 Location: 2451641-2452058 bp Feature: domain Description: PRK14673 Location: 2451641-2452058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05643 (DNA polymerase III subunit beta; Validated), gyrB (TIGR01059), RVT-Retrons, COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), YvlD (COG1950), fadh2 (TIGR00676), RVT-GII, GIIM (pfam08388), GatA (COG0154)
DLH (pfam01738), RlpA (COG0797), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUJQ01000006.1 Burkholderia cenocepacia strain VC1255 VC1255_contig204, whole genome shotgun sequence (11828 bp)
Overview 1 RT 1: 757-6134 bp Neighborhood of RT #1 [757, 6136] PRK09054 RpiR RVT-GII GIIM COG1981 Feature: gene Location: 757-2614 bp Feature: domain Description: PRK09054 Location: 769-1984 bp Feature: domain Description: PRK09054 Location: 769-1984 bp Feature: gene Location: 2909-3757 bp Ori: ONJ09662.1 Feature: domain Description: RpiR Location: 2912-3734 bp Feature: domain Description: RpiR Location: 2912-3734 bp Feature: gene Location: 3867-5234 bp Ori: ONJ09663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4200-4815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 200-4 815 bp Feature: domain Description: GIIM Note: maturase Location: 4875-5076 bp Feature: domain Description: GIIM Note: maturase Location: 4 875-5076 bp Feature: gene Location: 5305-5634 bp Feature: gene Location: 5720-6136 bp Ori: ONJ09664.1 Feature: domain Description: COG1981 Location: 5723-6134 bp Feature: domain Description: COG1981 Location: 5723-6134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737), RVT-GII, GIIM (pfam08388), COG1981 (Uncharacterized membrane protein )

Seq: MUJQ01000005.1 Burkholderia cenocepacia strain VC1255 VC1255_contig216.220.180, whole genome shotgun sequence (1051383 bp)
Overview 1 RT 1: 121706-126288 bp 2 RT 2: 364522-371514 bp Neighborhood of RT #1 [121706, 126311] COG1981 RVT-GII GIIM IS285 RpiR Neighborhood of RT #2 [364522, 371516] RVT-GII GIIM IS285 COG4315 Feature: gene Location: 121706-122122 bp Ori: ONJ09787.1 Feature: domain Description: COG1981 Location: 121709-122120 bp Feature: domain Description: COG1981 Location: 121709-122120 bp Feature: gene Location: 122208-122537 bp Feature: gene Location: 122608-124008 bp Ori: ONJ09788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122941-123556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122941-1235 5 6 bp Feature: domain Description: GIIM Note: maturase Location: 123616-123817 bp Feature: domain Description: GIIM Note: maturase Location: 123616-123817 bp Feature: gene Location: 124015-125283 bp Ori: ONJ09789.1 Feature: domain Description: IS285 Location: 124099-125269 bp Feature: domain Description: IS285 Location: 124099-125 269 bp Feature: gene Location: 125463-126311 bp Ori: ONJ09790.1 Feature: domain Description: RpiR Location: 125466-126288 bp Feature: domain Description: RpiR Location: 125 466-126288 bp Feature: gene Location: 364522-367602 bp Feature: gene Location: 367732-368061 bp Feature: gene Location: 368132-369430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368465-369080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368465 -369080 bp Feature: domain Description: GIIM Note: maturase Location: 369140-369341 bp Feature: domain Description: GIIM Note: maturase Location: 369140-369341 bp Feature: gene Location: 369457-370725 bp Ori: ONJ09990.1 Feature: domain Description: IS285 Location: 369541-370711 bp Feature: domain Description: IS285 Location: 3695 41-370711 bp Feature: gene Location: 371157-371516 bp Ori: ONJ10624.1 Feature: domain Description: COG4315 Location: 371178-371514 bp Feature: domain Description: COG4315 Location: 371178-3715 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1981 (Uncharacterized membrane protein ), RVT-GII, GIIM (pfam08388), IS285 (COG3328), RpiR (COG1737), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) )