myRT

myRT report for GCA_001990805.2_ASM199080v2

Download annotations/find similar RTs

Seq: MNPM02000005.1 Mastigocladus laminosus UU774 scaffold_4, whole genome shotgun sequence (270237 bp)
Overview 1 RT 1: 240504-244974 bp Neighborhood of RT #1 [240504, 244974] RVT_N RVT-GII RVT-GII McrA Feature: gene Location: 240504-240764 bp Feature: gene Location: 240770-241666 bp Feature: gene Location: 242241-243743 bp Ori: TFI55105.1 Feature: domain Description: RVT_N Location: 242277-242511 bp Feature: domain Description: RVT_N Location: 242277-24251 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242574-243000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242574-243000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243000-243168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243000-2431 68 bp Feature: domain Description: McrA Location: 243402-243723 bp Feature: domain Description: McrA Location: 243402-243723 bp Feature: gene Location: 243911-244282 bp Feature: gene Location: 244675-244974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: MNPM02000006.1 Mastigocladus laminosus UU774 scaffold_5, whole genome shotgun sequence (199022 bp)
Overview 1 RT 1: 140642-146172 bp 2 RT 2: 163862-173417 bp 3 RT 3: 182500-186119 bp Neighborhood of RT #1 [140642, 146172] HTH_32 rve Mu-transpos_C RVT_N RVT-GII RVT-GII GIIM HNHc phoR_proteo Neighborhood of RT #2 [163862, 173455] TPR_12 TPR_12 TPR_10 TPR_12 TPR_10 TPR_12 TPR_12 TPR_10 TPR_12 CHAT HTH_XRE DUF4384 RVT-CRISPR cas1 Cas_Cas1 Cas2_I_II_III Neighborhood of RT #3 [182500, 186172] RVT-GII RVT-GII GIIM McrA QdoI Feature: gene Location: 140642-140833 bp Feature: gene Location: 140833-142548 bp Ori: TFI54899.1 Feature: domain Description: HTH_32 Location: 141031-141274 bp Feature: domain Description: HTH_32 Location: 141031-1412 74 bp Feature: domain Description: rve Location: 141388-141784 bp Feature: domain Description: rve Location: 141388-141784 bp Feature: domain Description: Mu-transpos_C Location: 142015-142192 bp Feature: domain Description: Mu-transpos_C Location: 142 015-142 192 bp Feature: gene Location: 143127-145391 bp Ori: TFI54900.1 Feature: domain Description: RVT_N Location: 143130-143256 bp Feature: domain Description: RVT_N Location: 143130-1432 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143310-143988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143310-143988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144012-144645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144012 -144645 bp Feature: domain Description: GIIM Note: maturase Location: 144708-144930 bp Feature: domain Description: GIIM Note: maturase Location: 144708-144930 bp Feature: domain Description: HNHc Note: nucleases Location: 145167-145326 bp Feature: domain Description: HNHc Note: nucleases Location: 145167-14532 6 bp Feature: gene Location: 145467-145835 bp Feature: domain Description: phoR_proteo Location: 145476-145809 bp Feature: domain Description: phoR_proteo Location: 145476-145809 bp Feature: gene Location: 145852-146172 bp Feature: gene Location: 163862-167590 bp Ori: TFI54911.1 Feature: domain Description: TPR_12 Location: 163919-164105 bp Feature: domain Description: TPR_12 Location: 163919-164105 bp Feature: domain Description: TPR_12 Location: 164129-164354 bp Feature: domain Description: TPR_12 Location: 16412 9-164354 bp Feature: domain Description: TPR_10 Location: 164387-164504 bp Feature: domain Description: TPR_10 Location: 164387-164504 bp Feature: domain Description: TPR_12 Location: 164510-164735 bp Feature: domain Description: TPR_12 Location: 164510-164735 bp Feature: domain Description: TPR_10 Location: 164762-164885 bp Feature: domain Description: TPR_10 Location: 164762 -164885 bp Feature: domain Description: TPR_12 Location: 164885-165113 bp Feature: domain Description: TPR_12 Location: 164885-165113 bp Feature: domain Description: TPR_12 Location: 165137-165350 bp Feature: domain Description: TPR_12 Location: 165137-165350 bp Feature: domain Description: TPR_10 Location: 165392-165515 bp Feature: domain Description: TPR_10 Location: 165392 -165515 bp Feature: domain Description: TPR_12 Location: 165515-165731 bp Feature: domain Description: TPR_12 Location: 165515-165731 bp Feature: domain Description: CHAT Location: 166481-167573 bp Feature: domain Description: CHAT Location: 166481-167573 bp Feature: gene Location: 167633-168406 bp Ori: TFI54912.1 Feature: domain Description: HTH_XRE Location: 167675-167837 bp Feature: domain Description: HTH_XRE Location: 167675-167837 bp Feature: domain Description: DUF4384 Location: 168032-168263 bp Feature: domain Description: DUF4384 Location: 168032 -1682 63 bp Feature: gene Location: 168622-170628 bp Ori: TFI54913.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 168811-169417 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 168811-169417 bp Feature: domain Description: cas1 Location: 169633-170596 bp Feature: domain Description: cas1 Location: 169633-170596 bp Feature: gene Location: 172137-173177 bp Ori: TFI54914.1 Gene: cas1 Feature: domain Description: Cas_Cas1 Location: 172149-172890 bp Feature: domain Description: Cas_Cas1 Location: 172 149-172 890 bp Feature: gene Location: 173177-173455 bp Ori: TFI54940.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 173186-173417 bp Feature: domain Description: Cas2 _I_II_III Location: 173186-173417 bp Feature: gene Location: 182500-183318 bp Feature: gene Location: 183610-183873 bp Feature: gene Location: 184266-185150 bp Ori: TFI54921.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184287-184404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842 87-184404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184404-184569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184404-184569 bp Feature: domain Description: GIIM Note: maturase Location: 184626-184788 bp Feature: domain Description: GIIM Note: maturase Location: 18462 6-184788 bp Feature: domain Description: McrA Location: 184830-185124 bp Feature: domain Description: McrA Location: 184830-18512 4 bp Feature: gene Location: 185498-185569 bp Feature: gene Location: 185789-186172 bp Ori: TFI54922.1 Feature: domain Description: QdoI Location: 185852-186119 bp Feature: domain Description: QdoI Location: 185852 -186119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), phoR_proteo (TIGR02966), TPR_12 (pfam13424), TPR_10 (pfam13374)
CHAT (pfam12770), HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287), Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), McrA (COG4058), QdoI (COG1917)

Seq: MNPM02000017.1 Mastigocladus laminosus UU774 scaffold_16, whole genome shotgun sequence (352099 bp)
Overview 1 RT 1: 325592-330287 bp Neighborhood of RT #1 [325592, 330322] FAS1 DUF4174 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 325592-326176 bp Ori: TFI52888.1 Feature: domain Description: FAS1 Location: 325775-326168 bp Feature: domain Description: FAS1 Location: 3 25775-3 26168 bp Feature: gene Location: 326849-327445 bp Ori: TFI52926.1 Feature: domain Description: DUF4174 Location: 327002-327347 bp Feature: domain Description: DUF4174 Location: 3 27002-3 273 47 bp Feature: gene Location: 327570-328532 bp Ori: TFI52889.1 Gene: ltrA Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 327777-328383 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 27777-3 283 83 bp Feature: gene Location: 328658-329662 bp Ori: TFI52890.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 328670-329624 bp Feature: domain Description: Cas1_I-II-III Location: 3 28670-3 29624 bp Feature: gene Location: 330047-330322 bp Ori: TFI52891.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 330056-330287 bp Feature: domain Description: Cas2_I_II_III Location: 3 3 0056-3 3 0287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FAS1 (smart00554), DUF4174 (pfam13778), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)