myRT

myRT report for GCA_001990865.1_ASM199086v1

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Seq: MPUD01000010.1 Escherichia coli strain K30 IMT32646_S7_L001_R1_001_contig_30, whole genome shotgun sequence (151705 bp)
Overview 1 RT 1: 120118-123879 bp Neighborhood of RT #1 [120118, 123884] cobS cobU RVT-GII AlpA Feature: gene Location: 120118-120861 bp Feature: domain Description: cobS Location: 120121-120856 bp Feature: domain Description: cobS Location: 1 201 21 -1 20856 bp Feature: gene Location: 120858-121403 bp Feature: domain Description: cobU Location: 120861-121401 bp Feature: domain Description: cobU Location: 1 20861 -1 21 401 bp Feature: gene Location: 121653-122915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121896-122628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 896-1 22628 bp Feature: gene Location: 123269-123451 bp Feature: gene Location: 123477-123884 bp Feature: domain Description: AlpA Location: 123702-123879 bp Feature: domain Description: AlpA Location: 1 23702-1 23879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cobS (TIGR00317), cobU (PRK05800), RVT-GII, AlpA (COG3311)

Seq: MPUD01000044.1 Escherichia coli strain K30 IMT32646_S7_L001_R1_001_contig_61, whole genome shotgun sequence (14443 bp)
Overview 1 RT 1: 7771-10593 bp Neighborhood of RT #1 [7771, 10593] PHA02517 RVT-GII YkfC Feature: gene Location: 7771-8190 bp Feature: domain Description: PHA02517 Location: 7774-8179 bp Feature: domain Description: PHA02 517 Location: 7774-8179 bp Feature: gene Location: 8360-8491 bp Feature: gene Location: 8671-9483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8764-9343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8764-9343 bp Feature: gene Location: 9344-10360 bp Feature: domain Description: YkfC Location: 10040-10310 bp Feature: domain Description: YkfC Location: 10040-10310 bp Feature: gene Location: 10417-10593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344)

Seq: MPUD01000053.1 Escherichia coli strain K30 IMT32646_S7_L001_R1_001_contig_70, whole genome shotgun sequence (7174 bp)
Overview 1 RT 1: 1661-5813 bp Neighborhood of RT #1 [1661, 5813] DinI RVT_N RVT-GII RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 1661-1942 bp Feature: domain Description: DinI Location: 1751-1931 bp Feature: domain Description: DinI Location: 1751-193 1 bp Feature: gene Location: 2020-2289 bp Feature: gene Location: 2932-3666 bp Feature: domain Description: RVT_N Location: 2989-3226 bp Feature: domain Description: RVT_N Location: 2989-3 226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-3643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 277-3 643 bp Feature: gene Location: 3734-4657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3746-3926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 746-3 926 bp Feature: domain Description: GIIM Note: maturase Location: 3980-4211 bp Feature: domain Description: GIIM Note: maturase Location: 3 980-4211 bp Feature: domain Description: HNHc Note: nucleases Location: 4442-4601 bp Feature: domain Description: HNHc Note: nucleases Location: 4442-4601 bp Feature: gene Location: 4734-5636 bp Feature: domain Description: DUF1281 Location: 4803-5331 bp Feature: domain Description: DUF1281 Location: 4803 -53 3 1 bp Feature: domain Description: DUF1281_C Location: 5337-5577 bp Feature: domain Description: DUF1281_C Location: 53 3 7-5577 bp Feature: gene Location: 5640-5813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)