myRT

myRT report for GCA_001991115.1_ASM199111v1

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Seq: MUPR01000091.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-2000010, whole genome shotgun sequence (41227 bp)
Overview 1 RT 1: 35594-41057 bp Neighborhood of RT #1 [35594, 41134] DEXHc_Snf RVT_N RVT-GII DDE_Tnp_Tn3 Feature: gene Location: 35594-35899 bp Feature: gene Location: 36036-37091 bp Ori: ONN84497.1 Feature: domain Description: DEXHc_Snf Location: 36255-36510 bp Feature: domain Description: DEXHc_Snf Location: 36255-3651 0 bp Feature: gene Location: 37687-38757 bp Feature: domain Description: RVT_N Location: 37744-37981 bp Feature: domain Description: RVT_N Location: 37744-37981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38032-38683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38032-38683 bp Feature: gene Location: 38888-41134 bp Ori: ONN84498.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 39911-41057 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3991 1 -41 057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DDE_Tnp_Tn3 (pfam01526)

Seq: MUPR01000128.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-3000014, whole genome shotgun sequence (145047 bp)
Overview 1 RT 1: 11340-15089 bp Neighborhood of RT #1 [11340, 15160] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11340-12095 bp Ori: ONN77853.1 Feature: domain Description: his_ut_repres Location: 11418-12090 bp Feature: domain Description: his_ut_repres Location: 11418-12 090 bp Feature: gene Location: 12330-12902 bp Ori: ONN77854.1 Feature: domain Description: FIN Location: 12516-12867 bp Feature: domain Description: FIN Location: 12 516-12 867 bp Feature: gene Location: 13156-14505 bp Ori: ONN77855.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13621-14257 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1362 1-142 57 bp Feature: gene Location: 14478-14684 bp Feature: gene Location: 14831-15160 bp Ori: ONN77857.1 Feature: domain Description: Histone_HNS Location: 14852-15089 bp Feature: domain Description: Histone_HNS Location: 14852 -15089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUPR01000040.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-7000004, whole genome shotgun sequence (47614 bp)
Overview 1 RT 1: 41442-47496 bp Neighborhood of RT #1 [41442, 47549] HATPase_c_3 RVT-UG5 Tra5 HTH_Tnp_1 Feature: gene Location: 41442-42131 bp Feature: gene Location: 42383-44398 bp Ori: ONN93810.1 Feature: domain Description: HATPase_c_3 Location: 42452-42776 bp Feature: domain Description: HATPase_c_3 Location: 42452-42776 bp Feature: gene Location: 44926-46380 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4493 5-45409 bp Feature: gene Location: 46429-47262 bp Ori: ONN93811.1 Feature: domain Description: Tra5 Location: 46450-47230 bp Feature: domain Description: Tra5 Location: 46450-4723 0 bp Feature: gene Location: 47286-47549 bp Ori: ONN93812.1 Feature: domain Description: HTH_Tnp_1 Location: 47292-47496 bp Feature: domain Description: HTH_Tnp_1 Location: 47292-47496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, Tra5 (COG2801), HTH_Tnp_1 (pfam01527)

Seq: MUPR01000001.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-0, whole genome shotgun sequence (60485 bp)
Overview 1 RT 1: 47683-52072 bp Neighborhood of RT #1 [47683, 52095] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 47683-47943 bp Feature: gene Location: 47958-49859 bp Ori: ONO00550.1 Feature: domain Description: Dcm Location: 47991-48597 bp Feature: domain Description: Dcm Location: 4 7991-4 8597 bp Feature: domain Description: Dcm Location: 49596-49755 bp Feature: domain Description: Dcm Location: 4 9596-4 9755 bp Feature: gene Location: 49918-50916 bp Ori: ONO00551.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50011-50698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50011-50698 bp Feature: gene Location: 51260-51616 bp Ori: ONO00552.1 Feature: domain Description: Avd_like Location: 51287-51593 bp Feature: domain Description: Avd_like Location: 51287-51593 bp Feature: gene Location: 51631-52095 bp Ori: ONO00553.1 Feature: domain Description: DUF1566 Location: 51892-52072 bp Feature: domain Description: DUF1566 Location: 51892-52072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUPR01000099.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-1000011, whole genome shotgun sequence (43133 bp)
Overview 1 RT 1: 37369-41698 bp Neighborhood of RT #1 [37369, 41698] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 37369-37884 bp Ori: ONN83314.1 Feature: domain Description: PRK12511 Location: 37381-37876 bp Feature: domain Description: PRK125 11 Location: 37381-37876 bp Feature: gene Location: 37912-38271 bp Ori: ONN83315.1 Feature: domain Description: COG4315 Location: 37933-38269 bp Feature: domain Description: COG4315 Location: 37933-38269 bp Feature: gene Location: 38552-39919 bp Ori: ONN83316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38885-39500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38885 -395 00 bp Feature: domain Description: GIIM Note: maturase Location: 39560-39761 bp Feature: domain Description: GIIM Note: maturase Location: 395 60-39761 bp Feature: gene Location: 40090-41124 bp Ori: ONN83317.1 Feature: domain Description: COG3547 Location: 40105-41068 bp Feature: domain Description: COG35 47 Location: 40105 -41068 bp Feature: gene Location: 41504-41698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUPR01000065.1 Burkholderia cenocepacia strain VC2387 VC2387_contig-12000006, whole genome shotgun sequence (311575 bp)
Overview 1 RT 1: 12645-16394 bp Neighborhood of RT #1 [12645, 16465] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12645-13400 bp Ori: ONN89563.1 Feature: domain Description: his_ut_repres Location: 12723-13395 bp Feature: domain Description: his_ut_repres Location: 12723-13395 bp Feature: gene Location: 13635-14207 bp Ori: ONN89564.1 Feature: domain Description: FIN Location: 13821-14172 bp Feature: domain Description: FIN Location: 13821-14172 bp Feature: gene Location: 14461-15810 bp Ori: ONN89565.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14926-15562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14926 -1556 2 bp Feature: gene Location: 15783-15989 bp Feature: gene Location: 16136-16465 bp Ori: ONN89567.1 Feature: domain Description: Histone_HNS Location: 16157-16394 bp Feature: domain Description: Histone_HNS Location: 16 157-16 394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)