myRT

myRT report for GCA_001991135.1_ASM199113v1

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Seq: MUQA01000044.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-6, whole genome shotgun sequence (278277 bp)
Overview 1 RT 1: 11979-15728 bp Neighborhood of RT #1 [11979, 15799] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11979-12734 bp Ori: ONO34534.1 Feature: domain Description: his_ut_repres Location: 12057-12729 bp Feature: domain Description: his_ut_repres Location: 1 2057-1 2729 bp Feature: gene Location: 12969-13541 bp Ori: ONO34535.1 Feature: domain Description: FIN Location: 13155-13506 bp Feature: domain Description: FIN Location: 1 31 55-1 3506 bp Feature: gene Location: 13795-15144 bp Ori: ONO34536.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14260-14896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4260-1 4896 bp Feature: gene Location: 15117-15323 bp Feature: gene Location: 15470-15799 bp Ori: ONO34538.1 Feature: domain Description: Histone_HNS Location: 15491-15728 bp Feature: domain Description: Histone_HNS Location: 1 5491 -1 5728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQA01000054.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-8, whole genome shotgun sequence (67465 bp)
Overview 1 RT 1: 1-1955 bp Neighborhood of RT #1 [1, 1963] RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-780 bp Ori: ONO32813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-361 bp Feature: domain Description: GIIM Note: maturase Location: 421-622 bp Feature: domain Description: GIIM Note: maturase Location: 42 1-62 2 bp Feature: gene Location: 1061-1420 bp Ori: ONO32814.1 Feature: domain Description: COG4315 Location: 1082-1418 bp Feature: domain Description: COG4315 Location: 1082 -1418 bp Feature: gene Location: 1448-1963 bp Ori: ONO32815.1 Feature: domain Description: PRK12511 Location: 1460-1955 bp Feature: domain Description: PRK12 511 Location: 1460-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUQA01000101.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-7000013, whole genome shotgun sequence (11284 bp)
Overview 1 RT 1: 88-3234 bp Neighborhood of RT #1 [88, 3234] RVT-GII GIIM COG3547 Feature: gene Location: 88-1455 bp Ori: ONO25407.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421-103 6 bp Feature: domain Description: GIIM Note: maturase Location: 1096-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1096-1297 bp Feature: gene Location: 1626-2660 bp Ori: ONO25408.1 Feature: domain Description: COG3547 Location: 1641-2604 bp Feature: domain Description: COG3 547 Location: 1641-2604 bp Feature: gene Location: 3040-3234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQA01000020.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-1000003, whole genome shotgun sequence (143646 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONO38476.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: gene Location: 31683-32681 bp Ori: ONO38363.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-324 63 bp Feature: gene Location: 33025-33381 bp Ori: ONO38364.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: gene Location: 33396-33860 bp Ori: ONO38365.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF1566 Location: 33657-33837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUQA01000070.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-2000010, whole genome shotgun sequence (162776 bp)
Overview 1 RT 1: 34867-41840 bp Neighborhood of RT #1 [34867, 41887] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 34867-35172 bp Feature: gene Location: 35309-36364 bp Ori: ONO29439.1 Feature: domain Description: DEXHc_Snf Location: 35528-35783 bp Feature: domain Description: DEXHc_Snf Location: 35 5 28-35 783 bp Feature: gene Location: 36960-38030 bp Feature: domain Description: RVT_N Location: 37017-37254 bp Feature: domain Description: RVT_N Location: 37017-3725 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37305-37956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37305 -3795 6 bp Feature: gene Location: 38161-41076 bp Ori: ONO29560.1 Feature: domain Description: DUF4158 Location: 38200-38665 bp Feature: domain Description: DUF415 8 Location: 38200-38665 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39853-40999 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3985 3-40999 bp Feature: gene Location: 41222-41887 bp Feature: domain Description: GIIM Note: maturase Location: 41225-41450 bp Feature: domain Description: GIIM Note: maturase Location: 41225 -4145 0 bp Feature: domain Description: HNHc Note: nucleases Location: 41684-41840 bp Feature: domain Description: HNHc Note: nucleases Location: 41684-41840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUQA01000008.1 Burkholderia cenocepacia strain VC6581 VC6581_contig-1, whole genome shotgun sequence (103157 bp)
Overview 1 RT 1: 1-5395 bp Neighborhood of RT #1 [1, 5395] rve_3 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-408 bp Ori: ONO40667.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 145-343 bp Feature: gene Location: 457-1911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 46 6 -940 bp Feature: gene Location: 2439-4454 bp Ori: ONO40668.1 Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: gene Location: 4706-5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, HATPase_c_3 (pfam13589)